AT3G53520.4
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.851 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : UDP-glucuronic acid decarboxylase 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UDP-glucuronic acid decarboxylase 1 (UXS1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-xylose synthase 4 (TAIR:AT2G47650.2). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:19841635..19844057 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51395.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQLHKQMSS KRDEETIPMS QSSPYSPKTL KHPRSLPRSL HYLFREQRLL FILVGILIGS TFFILQPSLS RLGAAESTSL ITRSVSYAVT DSPPSRSTFN 101: SGGGGGRTGR VPVGIGRKRL RIVVTGGAGF VGSHLVDKLI GRGDEVIVID NFFTGRKENL VHLFSNPRFE LIRHDVVEPI LLEVDQIYHL ACPASPVHYK 201: YNPFYKTNVM GTLNMLGLAK RVGARFLLTS TSEVYGDPLE HPQKETYWGN VNPIGERSCY DEGKRTAETL AMDYHRGAGV EVRIARIFNT YGPRMCLDDG 301: RVVSNFVAQT IRKHPMTVYG DGKQTRSFQY VSDLVEGLVA LMENDHVGPF NLGNPGEFTM LELAEKSAST FKMSHKETPI PCMKWELCVQ VVKEVIDPSA 401: TIEFKPNTAD DPHKRKPDIS KAKEQLNWEP KISLREGLPR MVSDFRNRIL NEDEGKGL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)