AT3G53460.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chloroplast RNA-binding protein 29 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19819738..19821423 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38405.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||
| Length | 363 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSASASSLSA FNPKSLPLCV SRPASVSVLP PSLSFKLHSD HLVSIFASSA LKCSSPAEYP SRFVRNVAVS SDFEVEEDDM FADGDDSAPV ERNSFSPDLK 101: LFVGNLSFNV DSAQLAQLFE SAGNVEMVEV IYDKVTGRSR GFGFVTMSTA AEVEAAAQQF NGYVSRYLCS LLCLYLLIRV LCGLEFEGRP LRVNAGPPPP 201: KREESFSRGP RSGGYGSERG GGYGSERGGG YGSERGGGYG SERGGGYGSQ RSGGGYGGSQ RSSYGSGSGS GSGSGSGNRL YVGNLSWGVD DMALENLFNE 301: QGKVVEARVI YDRDSGRSKG FGFVTLSSSQ EVQKAINSLN GADLDGRQIR VSEAEARPPR GQF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)