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AT3G48830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.565
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: polynucleotide adenylyltransferase activity, RNA binding, nucleotide binding, nucleic acid binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Poly A polymerase, head domain (InterPro:IPR002646), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 11594 Blast hits to 10901 proteins in 2648 species: Archae - 2; Bacteria - 6462; Metazoa - 1299; Fungi - 748; Plants - 674; Viruses - 8; Other Eukaryotes - 2401 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G48830-MONOMEReggNOG:COG0617eggNOG:KOG0123eggNOG:KOG2159EMBL:AL132963EMBL:CP002686EnsemblPlants:AT3G48830
EnsemblPlants:AT3G48830.1entrez:824044Gene3D:3.30.70.330GeneID:824044GO:GO:0000166GO:GO:0003723GO:GO:0006396
GO:GO:0009506GO:GO:0016779Gramene:AT3G48830.1hmmpanther:PTHR13734hmmpanther:PTHR13734:SF47HOGENOM:HOG000240765InterPro:IPR000504
InterPro:IPR002646InterPro:IPR012677InterPro:IPR032828KEGG:ath:AT3G48830OMA:RFISKAMPfam:PF00076Pfam:PF01743
Pfam:PF12627Pfscan:PS50102PhylomeDB:Q9M300PIR:T49279PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_190452.1
SMART:SM00360SMR:Q9M300STRING:3702.AT3G48830.1SUPFAM:SSF54928SUPFAM:SSF81301SUPFAM:SSF81891TAIR:AT3G48830
UniGene:At.35678UniProt:Q9M300
Coordinates (TAIR10) chr3:+:18103272..18110216
Molecular Weight (calculated) 99382.60 Da
IEP (calculated) 7.67
GRAVY (calculated) -0.28
Length 881 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVLSVGFFA CRSHFPVLPL FYCFSKVQLN TVAAAMETVD DKDSDHHHDK GSNKTSKAPE WKKLNSKDLG ITTSMISKPT RIVLNGLKSK GYDVYLVGGC
101: VRDLILKRTP KDFDILTSAE LREVVRSFSR CEIIGKKFPI CHVHIGNDMI EVSSFSTSAQ NSLRNTRTGS GKSNGSYDED SIRFNNCLQR DFTINGLMFD
201: PYAKVIYDYL GGIEDIKKAK VRTVFHAGTS FQEDSARILR GTRIAARLGF TISKETAHFL KNLSFLVQRL HRGRILLEMN YMLAYGSAEA SLRLLWKFGI
301: LEILLPIQAA YLVRTGFKRR DKRSNLLLSL FGNLDKLLAP DKPCHSSLWL TILALHKALA DQPRYPSVVA AFSLAVHNGG DVLEAVKNTR KVTKPHNRSF
401: FELLEPEEMD SQTLLDEVMD FDSSIKEALG QMTDGRFISK AMAAYPQAPY SDMVFIPLQL YLDARRIFEC VKENGQKGFV PKQDSKREPE DDLETKPILK
501: KHKENSEEEN KEQIKGTVEL LETKSDQAPV KETVEGLDET PDSVEVPKKY MSGLLIRCFP SRKKTLYVCC LPRDTKMPDI IDFFKDVGQV VSVQLTTKRN
601: GLRLSTGFVE FASANEAKKA LDMKNGEYLC GNKLILGMAS CENIAQPKYE DYIQQESLPI EEEETPPKIV QSGANTLGCS IQAAAFSMTD ILSFHFYRLD
701: FFNDVGEVVS VRLIVSPESK HVGYGFVEFA SPCLANMALE KKNGEYLHDH KIFLGVAKTA PYPPRIKYNL AEKLWYEDYL LRDSLLIEED ETVEGLDETP
801: SCVEAVALRE KVLIIAHVPR RTKISHIIDF FKDAGQVVNV RLIVDQKGKP FGRGFVEFTS ADEAKKVRLV YSNDEKYFTS H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)