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AT3G29030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A5
Curator
Summary (TAIR10)
Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A5 (EXPA5); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 2184 Blast hits to 2181 proteins in 162 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 43; Plants - 2080; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJKXeggNOG:ENOG4111DWIEMBL:BT025711EnsemblPlants:AT3G29030EnsemblPlants:AT3G29030.1entrez:822543ExpressionAtlas:Q1ECM3
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:822543GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
Gramene:AT3G29030.1hmmpanther:PTHR31867InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009
KEGG:ath:AT3G29030OMA:MGPWINAPaxDb:Q1ECM3Pfam:PF01357Pfam:PF03330Pfam:Q38864Pfscan:PS50842
Pfscan:PS50843PhylomeDB:Q1ECM3PRIDE:Q1ECM3PRINTS:PR01225PRINTS:PR01226PROSITE:PS50842PROSITE:PS50843
ProteinModelPortal:Q1ECM3RefSeq:NP_189545.1SMART:SM00837SMR:Q1ECM3STRING:3702.AT3G29030.1SUPFAM:SSF49590SUPFAM:SSF50685
TAIR:AT3G29030tair10-symbols:ATEXP5tair10-symbols:ATEXPA5tair10-symbols:ATHEXP ALPHA 1.4tair10-symbols:EXP5tair10-symbols:EXPA5TMHMM:TMhelix
UniGene:At.5970UniProt:Q1ECM3UniProt:Q38864
Coordinates (TAIR10) chr3:-:11011538..11013068
Molecular Weight (calculated) 27613.00 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.06
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVLVISLLV VHLLAFSVCV QGGYRRGGHH PGGHMGPWIN AHATFYGGGD ASGTMGGACG YGNLYSQGYG LETAALSTAL FDQGLSCGAC FELMCVNDPQ
101: WCIKGRSIVV TATNFCPPGG ACDPPNHHFD LSQPIYEKIA LYKSGIIPVM YRRVRCKRSG GIRFTINGHS YFNLVLVTNV GGAGDVHSVS MKGSRTKWQL
201: MSRNWGQNWQ SNSYLNGQSL SFVVTTSDRR SVVSFNVAPP TWSFGQTYTG GQFRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)