AT3G25560.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.843 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NSP-interacting kinase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NSP-interacting kinase 2 (NIK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NSP-interacting kinase 1 (TAIR:AT5G16000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9279682..9282560 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70800.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQGRREAKK SYALFSSTFF FFFICFLSSS SAELTDKGVN FEVVALIGIK SSLTDPHGVL MNWDDTAVDP CSWNMITCSD GFVIRLEAPS QNLSGTLSSS 101: IGNLTNLQTV LLQNNYITGN IPHEIGKLMK LKTLDLSTNN FTGQIPFTLS YSKNLQYFRR VNNNSLTGTI PSSLANMTQL TFLDLSYNNL SGPVPRSLAK 201: TFNVMGNSQI CPTGTEKDCN GTQPKPMSIT LNSSQNKSSD GGTKNRKIAV VFGVSLTCVC LLIIGFGFLL WWRRRHNKQV LFFDINEQNK EEMCLGNLRR 301: FNFKELQSAT SNFSSKNLVG KGGFGNVYKG CLHDGSIIAV KRLKDINNGG GEVQFQTELE MISLAVHRNL LRLYGFCTTS SERLLVYPYM SNGSVASRLK 401: AKPVLDWGTR KRIALGAGRG LLYLHEQCDP KIIHRDVKAA NILLDDYFEA VVGDFGLAKL LDHEESHVTT AVRGTVGHIA PEYLSTGQSS EKTDVFGFGI 501: LLLELITGLR ALEFGKAANQ RGAILDWVKK LQQEKKLEQI VDKDLKSNYD RIEVEEMVQV ALLCTQYLPI HRPKMSEVVR MLEGDGLVEK WEASSQRAET 601: NRSYSKPNEF SSSERYSDLT DDSSVLVQAM ELSGPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)