suba logo
AT3G24070.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47920.1); Has 77 Blast hits to 77 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AY054476EMBL:BT006293EMBL:CP002686EnsemblPlants:AT3G24070EnsemblPlants:AT3G24070.1
entrez:821993GeneID:821993GO:GO:0003676GO:GO:0008270Gramene:AT3G24070.1hmmpanther:PTHR31286HOGENOM:HOG000151154
InterPro:IPR001878KEGG:ath:AT3G24070OMA:TRLCFKKPfam:PF00098Pfscan:PS50158PROSITE:PS50158Proteomes:UP000006548
RefSeq:NP_566743.1STRING:3702.AT3G24070.1TAIR:AT3G24070UniGene:At.26478UniProt:Q940K6
Coordinates (TAIR10) chr3:+:8693543..8694331
Molecular Weight (calculated) 28159.80 Da
IEP (calculated) 4.03
GRAVY (calculated) -0.42
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MWLKIRGIPI QYLCDGTVRE IASSMGEVME VELDDGMVDL SSVRARVNVC VDTRLCFKKV ARFDSGEVKI VSFRYEDIGM SKARFKFCFN CGDMNHLARN
101: CLIPWVDVPD PYERSLSPPP HESNSDGSAE GNCGDGGTSS GTLELLELVD AVQDFPVGDG EQLELAGVVQ DLPVGDGEQQ QQGLDGVEEA NATQVDSEMV
201: GISSEGSKRK FDAVEQGDEN PEKRLRGITD ATEGGSTDAT QGGSTDATEE GLGVSLKPLQ GE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)