AT3G19700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.958 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes leucine rich repeat (LRR) kinase. Iku2-3 identified in a screen for mutants with abnormal endosperm. Sporophytic recessive mutants have reduced embryo and endosperm size. Seed size is also reduced and the shape is abnormal suggesting an interaction between the endosperm and cell elongation in the integuments. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HAIKU2 (IKU2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, endosperm development; LOCATED IN: endomembrane system; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G09970.1); Has 212277 Blast hits to 140483 proteins in 4652 species: Archae - 172; Bacteria - 21845; Metazoa - 68496; Fungi - 11129; Plants - 84909; Viruses - 459; Other Eukaryotes - 25267 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:6843662..6846791 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110481.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.80 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 991 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRLLFIVRL LFLMPLASSR SNHSEEVENL LKLKSTFGET KSDDVFKTWT HRNSACEFAG IVCNSDGNVV EINLGSRSLI NRDDDGRFTD LPFDSICDLK 101: LLEKLVLGNN SLRGQIGTNL GKCNRLRYLD LGINNFSGEF PAIDSLQLLE FLSLNASGIS GIFPWSSLKD LKRLSFLSVG DNRFGSHPFP REILNLTALQ 201: WVYLSNSSIT GKIPEGIKNL VRLQNLELSD NQISGEIPKE IVQLKNLRQL EIYSNDLTGK LPLGFRNLTN LRNFDASNNS LEGDLSELRF LKNLVSLGMF 301: ENRLTGEIPK EFGDFKSLAA LSLYRNQLTG KLPRRLGSWT AFKYIDVSEN FLEGQIPPYM CKKGVMTHLL MLQNRFTGQF PESYAKCKTL IRLRVSNNSL 401: SGMIPSGIWG LPNLQFLDLA SNYFEGNLTG DIGNAKSLGS LDLSNNRFSG SLPFQISGAN SLVSVNLRMN KFSGIVPESF GKLKELSSLI LDQNNLSGAI 501: PKSLGLCTSL VDLNFAGNSL SEEIPESLGS LKLLNSLNLS GNKLSGMIPV GLSALKLSLL DLSNNQLTGS VPESLVSGSF EGNSGLCSSK IRYLRPCPLG 601: KPHSQGKRKH LSKVDMCFIV AAILALFFLF SYVIFKIRRD KLNKTVQKKN DWQVSSFRLL NFNEMEIIDE IKSENIIGRG GQGNVYKVSL RSGETLAVKH 701: IWCPESSHES FRSSTAMLSD GNNRSNNGEF EAEVATLSNI KHINVVKLFC SITCEDSKLL VYEYMPNGSL WEQLHERRGE QEIGWRVRQA LALGAAKGLE 801: YLHHGLDRPV IHRDVKSSNI LLDEEWRPRI ADFGLAKIIQ ADSVQRDFSA PLVKGTLGYI APEYAYTTKV NEKSDVYSFG VVLMELVTGK KPLETDFGEN 901: NDIVMWVWSV SKETNREMMM KLIDTSIEDE YKEDALKVLT IALLCTDKSP QARPFMKSVV SMLEKIEPSY NKNSGEASYG ESANDEITKV V |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)