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AT3G18210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.693
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G22950.1); Has 407 Blast hits to 406 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 257; Fungi - 0; Plants - 94; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y4QUeggNOG:KOG1971EMBL:AB020749EMBL:AF386971EMBL:BT008485EMBL:CP002686EnsemblPlants:AT3G18210
EnsemblPlants:AT3G18210.1EnsemblPlants:AT3G18210.2entrez:821348GeneID:821348GO:GO:0005506GO:GO:0016705GO:GO:0031418
Gramene:AT3G18210.1Gramene:AT3G18210.2hmmpanther:PTHR24014hmmpanther:PTHR24014:SF4HOGENOM:HOG000030244IntAct:Q9LV19InterPro:IPR005123
InterPro:IPR006620KEGG:ath:AT3G18210OMA:HIPGQAVPfscan:PS51471PhylomeDB:Q9LV19PROSITE:PS51471Proteomes:UP000006548
RefSeq:NP_001078177.1RefSeq:NP_566600.1SMART:SM00702STRING:3702.AT3G18210.1TAIR:AT3G18210UniGene:At.20534UniProt:Q9LV19
Coordinates (TAIR10) chr3:-:6238264..6240396
Molecular Weight (calculated) 45181.60 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.56
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSEQREGSQ ETTTTTVEGN GTIAGQNSHS AAPTTLRATS TMVSCQRLRL NPNNEHRPDS YEDLQLDFPN SVYSSLEKYL PPNMLVSNRD EKIKFMTDIM
101: LRHLPHGERS RAQRHSDYRL KITTNYQPLH KELYTLVPTV CFVPAFLKAI NENTEESFRN IISEPSPGVF VFDMLQPSFC EMMLAEIDNF ERWVGETKFR
201: IMRPNTMNKY GAVLDDFGLD TMLDKLMEGF IRPISKVFFS DVGGATLDSH HGFVVEYGKD RDVDLGFHVD DSEVTLNVCL GNQFVGGELF FRGTRCEKHV
301: NTATKADETY DYCHIPGQAV LHRGRHRHGA RATTCGHRVN MLLWCRSSVF RELKTHHKDF SSWCGECFCE KRDEKVRSID ALRKKLFKPR QTQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)