AT3G14810.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.856 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : mechanosensitive channel of small conductance-like 5 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
mechanosensitive channel of small conductance-like 5 (MSL5); INVOLVED IN: transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 4 (TAIR:AT1G53470.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:4971223..4974216 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96431.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.19 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||
| Length | 846 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAVDSTDRR DFIVNINGQE SGAVGATGSS SNAEGGNIWK ESSYDFWDGE KGKNDKKGDD EDEDGGSFHF RQRGERRHSS AELSDPPSKL IGQFLHKQRA 101: SGDEISLDVE LNMAELQSNT PPRPATASNT PRRGLTTISE SSSPVKTKVK ADAVRRRQNR TSLGGSSDEE GRNRDEAEVL KCGSKKPMLS RNKTKSRLQD 201: PPTPTHPAID KTEMKSGRRS GIFKSGFLGK SPKAGTPGRN GFEEEEEEDP FLDEDLPEEF KRDKLSFWVF LEWISLVLIV TSLVCSLTIH NLQRKTWWKL 301: DLWKWEVTVL VLICGRLVSS WIVRIIVFLV EKNFTWRKRV LYFVYGVRKS VQNCLWLGLV LLAWHFLFDK KVERETRSTA LRTYFDRIQE SLFTQYVIET 401: LSGPPLMEIQ RMEEEEQQVA EDVKSLEKLA GAKLPPALKA TVKSFMKVGK SPGLNRIGSK RGEDGEGIRI DQLKRMNTKN VSAWNMKRLM NIILKGAIST 501: LDQNMQDTTQ EDEDATHIRS EYEAKCAARK IFHNVTEPGS RYIYLEDFLR FLCEEEAERA MALFEGASES DKISKSCLKN WVAFRERRAL ALTLNDTKTA 601: VDRLHRIINV VIGIIIIIIW LLILGIATTR FLLVLSSQLL LVAFVFGNSC KTIFEAIIFL FVMHPFDVGD RCEIDGVQLV VEEMNILTTV FLRYDNQKII 701: YPNSVLGTKP IANYYRSPDM GDAVEFCVHI ATPPEKITAI KQRILSYVDN KKDYWYPAPM IVFLSMDDLN SVKIAVWLTH RMNHQDMGER YIRRGLLLEE 801: VGKTCRELDI EYRLYPLNIN VRSLPPTANP TSSDRIPPSW MQQRGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)