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AT3G07890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.671
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1); Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2600; Fungi - 1061; Plants - 534; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5210eggNOG:KOG2058EMBL:AK228869EMBL:BT025552EMBL:CP002686EnsemblPlants:AT3G07890EnsemblPlants:AT3G07890.1
EnsemblPlants:AT3G07890.2entrez:819980GeneID:819980Gramene:AT3G07890.1Gramene:AT3G07890.2hmmpanther:PTHR22957hmmpanther:PTHR22957:SF327
HOGENOM:HOG000006118InterPro:IPR000195KEGG:ath:AT3G07890OMA:ATHLEDMPfam:PF00566Pfscan:PS50086PhylomeDB:Q1H5B2
PROSITE:PS50086Proteomes:UP000006548RefSeq:NP_001078123.1RefSeq:NP_566323.1SMART:SM00164SMR:Q1H5B2STRING:3702.AT3G07890.1
SUPFAM:SSF47923TAIR:AT3G07890UniGene:At.23264UniProt:Q1H5B2
Coordinates (TAIR10) chr3:-:2516639..2518784
Molecular Weight (calculated) 45325.10 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.11
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGIQSRRDL TMELQSQIPI LRPSIHARRA NIVVKFQDLY GFTVEGNVDD VNVLNEVREK VRNQGRVWWA LEASKGANWY LQPEILLIGD GIALKTSLKL
101: STLTNAITLK RLIRKGIPPV LRPKVWFSLS GAAKKKSTVP ESYYSDLTKA VEGMVTPATR QIDHDLPRTF PGHPWLDTPE GHAALRRVLV GYSFRDSDVG
201: YCQGLNYVAA LLLLVMKTEE DAFWMLAVLL ENVLVRDCYT TNLSGCHVEQ RVFKDLLAQK CSRIATHLED MGFDVSLVAT EWFLCLFSKS LPSETTLRVW
301: DVLFYEGAKV LFHAALAIFK MKENELLMTH QVGDVINILQ KTSHQLFDPD ELLTVAFEKI GSMTTNTISK QRKKQEPAVM AELDQRLRRL NSLKESGKST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)