AT3G07890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.757 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G37290.1); Has 5103 Blast hits to 5093 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 2600; Fungi - 1061; Plants - 534; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2516639..2518784 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45325.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.89 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||
| Length | 400 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFGIQSRRDL TMELQSQIPI LRPSIHARRA NIVVKFQDLY GFTVEGNVDD VNVLNEVREK VRNQGRVWWA LEASKGANWY LQPEILLIGD GIALKTSLKL 101: STLTNAITLK RLIRKGIPPV LRPKVWFSLS GAAKKKSTVP ESYYSDLTKA VEGMVTPATR QIDHDLPRTF PGHPWLDTPE GHAALRRVLV GYSFRDSDVG 201: YCQGLNYVAA LLLLVMKTEE DAFWMLAVLL ENVLVRDCYT TNLSGCHVEQ RVFKDLLAQK CSRIATHLED MGFDVSLVAT EWFLCLFSKS LPSETTLRVW 301: DVLFYEGAKV LFHAALAIFK MKENELLMTH QVGDVINILQ KTSHQLFDPD ELLTVAFEKI GSMTTNTISK QRKKQEPAVM AELDQRLRRL NSLKESGKST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)