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AT2G48030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAse I-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G21530.1); Has 404 Blast hits to 404 proteins in 167 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG0ReggNOG:ENOG410Y2DJEMBL:AC006072EMBL:AY087825
EMBL:BT025999EMBL:CP002685EnsemblPlants:AT2G48030EnsemblPlants:AT2G48030.1
entrez:819415Gene3D:3.60.10.10GeneID:819415GO:GO:0004519
GO:GO:0004527Gramene:AT2G48030.1hmmpanther:PTHR14859hmmpanther:PTHR14859:SF2
HOGENOM:HOG000240069InterPro:IPR005135InterPro:IPR027317KEGG:ath:AT2G48030
OMA:RSSDGPHPANTHER:PTHR14859Pfam:PF03372PhylomeDB:Q9ZU86
PIR:E84922Proteomes:UP000006548RefSeq:NP_566121.1SUPFAM:SSF56219
TAIR:AT2G48030UniGene:At.27774UniProt:Q9ZU86
Coordinates (TAIR10) chr2:-:19647834..19649988
Molecular Weight (calculated) 49199.30 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.54
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MLNLIAFLRR RLRRPRKARI SVNHHHLSVD SSPETHHHQN GFSSAAAIHP NPDKTITVAT FNAAMFSMAP AVPSNKGLPF RSKSTVDRPK SILKPMNAAA
101: SPTHDSRKQQ RFAKSRPRRV SINLPDNEIS RQLSFREDPQ HSPLRPGEIG LRSTRTALEV LSELDADVLA LQDVKADEAD QMRPLSDLAA ALGMNYVFAE
201: SWAPEYGNAI LSKWPIKSSN VLRIFDHTDF RNVLKASIEV PGSGEVEFHC THLDHLDEKW RMKQVDAIIQ STNVPHILAG ALNSLDESDY SPERWTDIVK
301: YYEEMGKPIP KAQVMRFLKS KEYTDAKDFA GECESVVVVA KGQSVQGTCK YGTRVDYILA SSDSPYRFVP GSYSVLSSKG TSDHHIVKVD VVKATSINVN
401: EQEQRPIRSH KLQRITATTY NNNSSLTKAS WRTHYYKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)