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AT2G44980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNF2 domain-containing protein / helicase domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0553eggNOG:KOG0385EMBL:CP002685EnsemblPlants:AT2G44980EnsemblPlants:AT2G44980.1entrez:819106ExpressionAtlas:F4IV46
Gene3D:3.40.50.300GeneID:819106GO:GO:0004386GO:GO:0005524Gramene:AT2G44980.1hmmpanther:PTHR10799InterPro:IPR000330
InterPro:IPR001650InterPro:IPR014001InterPro:IPR027417KEGG:ath:AT2G44980ncoils:CoilPaxDb:F4IV46Pfam:PF00176
Pfam:PF00271Pfscan:PS51192Pfscan:PS51194PRIDE:F4IV46PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4IV46
Proteomes:UP000006548Reactome:R-ATH-5696395Reactome:R-ATH-5696400RefSeq:NP_182025.2SMART:SM00487SMART:SM00490SMR:F4IV46
STRING:3702.AT2G44980.2SUPFAM:SSF52540SUPFAM:SSF52949TAIR:AT2G44980UniGene:At.47803UniProt:F4IV46
Coordinates (TAIR10) chr2:-:18552440..18556669
Molecular Weight (calculated) 95884.40 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.27
Length 851 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKESSPPKV PSTTMEYERR LEAAAEIILE KEAKFSNTPP DCSEFGVTAT LKPHQVEGVS WLIQKYLLGV NVVLELDQMG LGKTLQAISF LSYLKFRQGL
101: PGPFLVLCPL SVTDGWVSEI NRFTPNLEVL RYVGDKYCRL DMRKSMYDHG HFLPFDVLLT TYDIALVDQD FLSQIPWQYA IIDEAQRLKN PNSVLYNVLL
201: EQFLIPRRLL ITGTPIQNNL TELWALMHFC MPLVFGTLDQ FLSAFKETGD GLDVSNDKET YKSLKFILGA FMLRRTKSLL IESGNLVLPP LTELTVMVPL
301: VSLQKKIYTS ILRKELPGLL ELSSGGSNHT SLQNIVIQLR KACSHPYLFP GIEPEPFEEG EHLVQASGKL LVLDQLLKRL HDSGHRVLLF SQMTSTLDIL
401: QDFMELRRYS YERLDGSVRA EERFAAIKNF SVDGSNAFVF MISTRAGGVG LNLVAADTVI FYEQDWNPQV DKQALQRAHR IGQISHVLSI NLVTEHSVEE
501: VILRRAERKL QLSHNVVGDN MEEKEEDGGD LRSLVFGLQR FDPEEIHNEE SDNLKMVEIS SLAEKVVAIR QNVEPDKEER RFEINSSDTL LGNTSSASLD
601: SELDEASYLS WVEKLKEAAR SSKDEKIIEL GNRKNLSEER NLRIEAARKK AEEKKLATWG AHGYQSLSVE EPILPDDVDS SSDAGSVNFV FGDCTNPSTV
701: SHEPAIIFSC VDDSGNWGRG GMFDALSKLS NTVPTAYHRA SEFKDLHLGD LHLIKIDDND DQQNTQASKP LWVAVAVTQS YNSRRKVPRS SISIPDLESC
801: LAKASFSASQ KSASLHMPRI GYQDGSDRSQ WYTVERLLRK YSSIFTVKIF V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)