AT2G40130.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.425 plastid 0.338 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-2 (InterPro:IPR013093); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16766030..16769074 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101617.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.75 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 910 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTAVNVAKQ CLTAEASYAL EEAVNVARRR GHSQTTSLHA ISALLSLPTS VLRDACARVR NSAYSPRLQF KALDLCLSVS LDRIQSGHQL GSDDSPPVSN 101: SLMAAIKRSQ AHQRRLPENF RIYQEMSQSQ NQNSLSCVKV ELRQLILSIL DDPVVSRVFG EAGFRSSELK LSIIRPVPHL LRYSSQQPLF LCNLTGNPEP 201: NPVRWGFTVP SLNFNGDLDY RRISAVFTKD KGRNPLLVGV SAYGVLTSYL NSLEKNQTDG MILPTKLHGL TAVNIGSEIS DQISVKFDKT YTDTRFHDLG 301: KLAEQGSGPG LLLHYGDLRV FTNGEGNVPA ANYIVNRISE LLRRHGRRVW LIGATTSNEV YEKMMRRFPN VEKDWDLQLL TITSLKPCLP HNKSSLIGSF 401: VPFGGFFSTT PSELKLPFSG FKTEITGPVS SISDQTQSTL PPWLQMTTRT DLNQKSSAKV VQTKEGLESV CGNKFTSSAS ASTCSAKSVT TDLNLRVSSV 501: TTGSGLKKHL DSKDFSQPQS VSSYSFDNPR DLNAESFKII YRRLTDMVSG QDEAARVISC ALSQPPKSVT RRDVWLNLVG PDTVGKRRMS LVLAEIVYQS 601: EHRFMAVDLG AAEQGMGGCD DPMRLRGKTM VDHIFEVMCR NPFCVVFLEN IEKADEKLQM SLSKAIETGK FMDSHGREVG IGNTIFVMTS SSQGSATTTS 701: YSEEKLLRVK GRQVEIRIET VSSLPMVRSV YGPTSVNKRK LMGLGNLQET KDTVESVKRL NRTTNGVLDL NLPAQETEIE EKYHCEENSN VWLMNLKNHK 801: RLIEVPFKPF DFEGLAEKIK KSVKENFDKC VRSDCLLEVD PKIIERLLAA VYFSDSRKDI KELLENIMSP VFLRIKERYE ITTSCVVKLV GRDLDIFLED 901: QMDLFFVKSQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)