AT2G35230.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VQ motif-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system. | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
VQ motif-containing protein; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G32610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14843192..14844079 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 32696.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.09 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.01 | ||||||||||||||||||||||||
| Length | 295 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPPQSHPQF ARQPPHQPPF PQTTQQPMMG HRDQFWSNTA ESPVSEYMRY LQSSLGDSGP NANQMQPGHE QRPYIPGHEQ RPYVPGNEQQ PYMPGNEQRP 101: YIPGHEQRSY MPAQSQSQSQ PQPQPQPQQH MMPGPQPRMN MQGPLQPNQY LPPPGLVPSP VPHNLPSPRF NAPVPVTPTQ PSPMFSQMYG GFPSPRYNGF 201: GPLQSPTSQF LQPSPTGYPN MFSPRSPYPL LSPGVQYPQP LTPNFSFSQI AQQGSLGPGA GPSQGPPQPP PSPGLMFPLS PSGFFPMPSP RWNDY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)