AT2G29140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 3 (PUM3); FUNCTIONS IN: RNA binding, binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 1 (TAIR:AT2G29200.1); Has 3920 Blast hits to 2027 proteins in 241 species: Archae - 0; Bacteria - 8; Metazoa - 815; Fungi - 1344; Plants - 871; Viruses - 0; Other Eukaryotes - 882 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12531392..12535060 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105993.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 964 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMIPELGRRP MHRGNEDSSF GDDYEKEIGV LLGEQQRRQV EADELERELN LYRSGSAPPT VDGSLSAAGG LFSGGGGASF LEFGGVNKGN GFGGDDEEFR 101: KDPAYLSYYY ANMKLNPRLP PPLMSREDLR VAQRLKGSNN VLGGVGDRRK VNDSRSLFSM PPGFEAGKPG ASASEWDANG LIGLGLGGKQ KSFADIFQAD 201: MGHPVVQQPS RPASRNTFDE NVDSNNNLSP SASQGIGAPS PYCYAAVLGS SLSRNGTPDP QGIARVPSPC LTPIGSGRVS SNDKRNTSNQ SPFNGVTSGL 301: NESSDLVNAL SGLNLSGTGG LDERGQAEQD VEKVRNYMFG LQDGHNEVNP HGFPNRSDQA RGTASCRNSQ MRGSQGSAYN SGSGVANPYQ HHDSPNYYAL 401: NPAVASMMAN QLGTNNYSPM YENASATLGY SAMDSRLHGG SFVSSGQNLS ESRNIGRVGN RMMEGGTGHP SHLADPMYHQ YARFSENADS FDLLNDPSMD 501: RNYGNSYMNM LEIQRAYLGS QKSQYGLPYK SGSPNSHSYY GSPTFGSNMS YPGSPLAHHG MPNSLMSPYS PMRRGEVNMR YPAATRNYTG GVMGSWHMDA 601: SLDEGFGSSM LEEFKSNKTR GFELSEIAGH VVEFSSDQYG SRFIQQKLET ATTDEKNMVY EEIMPKALAL MTDVFGNYVI QKFFEHGLPP QRRELGEKLI 701: DNVLPLSLQM YGCRVIQKAI EVVDLDQKIQ MVKELDGHVM RCVRDQNGNH VVQKCIECVP EENIEFIIST FFGHVVTLST HPYGCRVIQR VLEHCHNPDT 801: QSKVMEEILS TVSMLTQDQY GNYVVQHVLE HGKPDERTVI IKELAGKIVQ MSQQKFASNV VEKCLTFGGP EERELLVNEM LGTTDENEPL QAMMKDQFAN 901: YVVQKVLETC DDQQRELILT RIKVHLNALK KYTYGKHIVA RVEKLVAAGE RRMALQSLPQ PLVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)