AT2G23740.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10098213..10103229 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 155775.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1382 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEVKMDELVL DVDVEEATGS ELLVKSEPEA DLNAVKSSTD LVTVTGPIGK NGEGESSPSE PKWLQQDEPI ALWVKWRGKW QAGIRCAKAD WPLTTLRGKP 0101: THDRKKYCVI FFPHTKNYSW ADMQLVRSIN EFPDPIAYKS HKIGLKLVKD LTAARRYIMR KLTVGMFNIV DQFPSEVVSE AARDIIIWKE FAMEATRSTS 0201: YHDLGIMLVK LHSMILQRYM DPIWLENSFP LWVQKCNNAV NAESIELLNE EFDNCIKWNE VKSLSESPMQ PMLLSEWKTW KHDIAKWFSI SRRGVGEIAQ 0301: PDSKSVFNSD VQASRKRPKL EIRRAETTNA THMESDTSPQ GLSAIDSEFF SSRGNTNSPE TMKEENPVMN TPENGLDLWD GIVVEAGGSQ FMKTKETNGL 0401: SHPQDQHINE SVLKKPFGSG NKSQQCIAFI ESKGRQCVRW ANEGDVYCCV HLASRFTTKS MKNEGSPAVE APMCGGVTVL GTKCKHRSLP GFLYCKKHRP 0501: HTGMVKPDDS SSFLVKRKVS EIMSTLETNQ CQDLVPFGEP EGPSFEKQEP HGATSFTEMF EHCSQEDNLC IGSCSENSYI SCSEFSTKHS LYCEQHLPNW 0601: LKRARNGKSR IISKEVFVDL LRGCLSREEK LALHQACDIF YKLFKSVLSL RNSVPMEVQI DWAKTEASRN ADAGVGEFLM KLVSNERERL TRIWGFATGA 0701: DEEDVSLSEY PNRLLAITNT CDDDDDKEKW SFSGFACAIC LDSFVRRKLL EIHVEERHHV QFAEKCMLLQ CIPCGSHFGD KEQLLVHVQA VHPSECKSLT 0801: VASECNLTNG EFSQKPEAGS SQIVVSQNNE NTSGVHKFVC KFCGLKFNLL PDLGRHHQAE HMGPSLVGSR GPKKGIRFNT YRMKSGRLSR PNKFKKSLGA 0901: VSYRIRNRAG VNMKRRMQGS KSLGTEGNTE AGVSPPLDDS RNFDGVTDAH CSVVSDILLS KVQKAKHRPN NLDILSAARS ACCRVSVETS LEAKFGDLPD 1001: RIYLKAAKLC GEQGVQVQWH QEGYICSNGC KPVKDPNLLH PLIPRQENDR FGIAVDAGQH SNIELEVDEC HCIMEAHHFS KRPFGNTAVL CKDISFGKES 1101: VPICVVDDDL WNSEKPYEMP WECFTYVTNS ILHPSMDLVK ENLQLRCSCR SSVCSPVTCD HVYLFGNDFE DARDIYGKSM RCRFPYDGKQ RIILEEGYPV 1201: YECNKFCGCS RTCQNRVLQN GIRAKLEVFR TESKGWGLRA CEHILRGTFV CEYIGEVLDQ QEANKRRNQY GNGDCSYILD IDANINDIGR LMEEELDYAI 1301: DATTHGNISR FINHSCSPNL VNHQVIVESM ESPLAHIGLY ASMDIAAGEE ITRDYGRRPV PSEQENEHPC HCKATNCRGL LS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)