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AT2G22970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 11 (SCPL11); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 12 (TAIR:AT2G22920.2); Has 3892 Blast hits to 3798 proteins in 426 species: Archae - 0; Bacteria - 404; Metazoa - 645; Fungi - 842; Plants - 1574; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22970-MONOMERBioCyc:ARA:GQT-1450-MONOMERBioCyc:ARA:GQT-1451-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282EMBL:AC004401
EMBL:AC004786EMBL:AY039596EMBL:AY113074EMBL:BT000747EMBL:CP002685EnsemblPlants:AT2G22970EnsemblPlants:AT2G22970.1
entrez:816828ESTHER:arath-SCP11ExpressionAtlas:Q2V465Gene3D:3.40.50.1820GeneID:816828Genevisible:Q2V465GO:GO:0004185
GO:GO:0005576hmmpanther:PTHR11802hmmpanther:PTHR11802:SF29HOGENOM:HOG000198297InParanoid:Q2V465InterPro:IPR001563InterPro:IPR029058
KEGG:ath:AT2G22970KO:K16296MEROPS:S10.A08PANTHER:PTHR11802PaxDb:Q2V465Pfam:PF00450Pfam:Q2V465
PhylomeDB:Q2V465PIR:A84619PRIDE:Q2V465PRINTS:PR00724PRO:PR:Q2V465ProteinModelPortal:Q2V465Proteomes:UP000006548
RefSeq:NP_001031401.1RefSeq:NP_179880.1SMR:Q2V465STRING:3702.AT2G22970.3SUPFAM:SSF53474TAIR:AT2G22970tair10-symbols:SCPL11
UniGene:At.12556UniProt:Q2V465
Coordinates (TAIR10) chr2:+:9774875..9778224
Molecular Weight (calculated) 49235.60 Da
IEP (calculated) 6.57
GRAVY (calculated) -0.28
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MELTLKLLVL LLFILNHHVG SGSIVKFLPG FEGPLPFELE TGYIGIGEEE EVQLFYYFIK SERNPKEDPL LLWLSGGPGC SSITGLLFQN GPLALKSEVY
101: NGSVPSLVST TYSWTKTANI IFLDQPVGAG FSYSRAPLID TPTDTGEVKR IHEFLQKWLS KHPQFSSNHF YAGGDSYSGM IVPALVQEIS KGNYICCNPP
201: INLKGYVLGN PITHEDDPNY RIPFSHGMAL ISDELYESIR EACKGNYFNV DPRNTKCLKL VEEFHKCTDK LNEFHILSPD CDTASPDCYL YPFYLISFWA
301: NDESVRDALH VNKRSIGKWE RCNYLSKPYN KDIKSSVPYH MNNSVSGYRS LIYSGDHDLV VPFLATQAWI KSLNYSIIDE WRPWMIRDQI TGYTRTYSNK
401: MTFATVKGSG HTAENKPQES FIMFRRWING QPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)