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AT2G01340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.782
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Encodes a protein whose expression is responsive to nematode infection.
Computational
Description (TAIR10)
At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYN6eggNOG:ENOG410YM8HEMBL:AK226497EMBL:BT021987EMBL:BT025275EMBL:CP002685EnsemblPlants:AT2G01340
EnsemblPlants:AT2G01340.1entrez:814662GeneID:814662GO:GO:0005886GO:GO:0009624Gramene:AT2G01340.1hmmpanther:PTHR33148
hmmpanther:PTHR33148:SF3HOGENOM:HOG000242814InterPro:IPR025322KEGG:ath:AT2G01340OMA:AQDRLECPfam:PF14009PhylomeDB:Q52K81
Proteomes:UP000006548RefSeq:NP_178243.2TAIR:AT2G01340tair10-symbols:At17.1UniGene:At.13541UniGene:At.63381UniGene:At.70733
UniProt:Q52K81
Coordinates (TAIR10) chr2:+:164014..165068
Molecular Weight (calculated) 23706.60 Da
IEP (calculated) 10.45
GRAVY (calculated) -0.59
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSLGGKKT TKVMKIDGET FKLKTPVTAE EVLKDFPGHV LLDSESVKHY GARAKPLEAK QRLEAKRLYF VVEPVKECPP RRVRSGIHVS AKERLESLML
101: ARRSSSDLSI LKPPGGWTTE EEEGAVRRVK VRIPKAELEK LVKEGATEAE ATQKIAALFM AKQRQEEAYQ NTRQDEPATT ATATATTTAT RGVKSRLKRV
201: SFMAERGGGS EITVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)