AT2G01340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.655 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein whose expression is responsive to nematode infection. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:164014..165068 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 23706.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||
| Length | 215 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNSLGGKKT TKVMKIDGET FKLKTPVTAE EVLKDFPGHV LLDSESVKHY GARAKPLEAK QRLEAKRLYF VVEPVKECPP RRVRSGIHVS AKERLESLML 101: ARRSSSDLSI LKPPGGWTTE EEEGAVRRVK VRIPKAELEK LVKEGATEAE ATQKIAALFM AKQRQEEAYQ NTRQDEPATT ATATATTTAT RGVKSRLKRV 201: SFMAERGGGS EITVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)