AT1G79280.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear pore anchor | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nuclear pore anchor (NUA); CONTAINS InterPro DOMAIN/s: Tetratricopeptide, MLP1/MLP2-like (InterPro:IPR012929). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29819176..29832809 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 237243.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2094 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPLFMPDEEL ARLSSDAASV VAERADEYIR KIYAELDSVR AKADAASITA EQTCSLLEQK YLSLSQDFSS LESQNAKLQS DFDDRLAELA QSQAQKHQLH 0101: LQSIEKDGEV ERMSTEMSEL HKSKRQLMEL LEQKDAEISE KNSTIKSYLD KIVKLTDTSS EKEARLAEAT AELARSQAMC SRLSQEKELT ERHAKWLDEE 0201: LTAKVDSYAE LRRRHSDLES EMSAKLVDVE KNYIECSSSL NWHKERLREL ETKIGSLQED LSSCKDAATT TEEQYTAELF TANKLVDLYK ESSEEWSRKA 0301: GELEGVIKAL EARLSQVESS YKERLDKEVS TKQLLEKENG DLKQKLEKCE AEIEKTRKTD ELNLIPFSNF TRRVDNSGTS NMIEESQAVI SKVPAGVSGT 0401: ALAASLLRDG WSLAKIYEKY QEAVDAMRHE QLGRKEAEMI LQRVLSELEE KAGFIQEERG EYERVVEAYC LVNQKLQDSV SEQSNMEKFI MELKADLRRR 0501: ERENTLLQKD ISDLQKQVTI LLKECRDVQL RCGAARDDDE DDYPLLSDVE MEMESEADKI ISEHLLKFKD INGLVEQNVK LRNLVRSLSE QIESRETELK 0601: ETFEVDLKNK TDEASAKVAT VLKRAEEQGQ MIESLHTSVA MYKRLYEEEQ KLHSSDSRSS DLSPAVVPGR KNFLHLLEDS EEATKRAQEK AFERIRILEE 0701: DFAKARSEVI AIRSERDKLA MEANFAREKL EGIMKESERK REEMNSVLAR NIEFSQLIID HQRKLRESSE SLHAAEEISR KLSMEVVYHH PLKKELLSNA 0801: EKRASDEVSA LSQRVYRLQA TLDTVQSTEE VREETRAAER RKQEEHIKQL QREWAEAKKE LQEERSNARD FTSDRNQTLN NAVMQVEEMG KELANALKAV 0901: SVAESRASVA EARLSDLEKK IRSSDPKTLD MDSGGIVSLS DKEMSIELRT AKEEIEKLRG EVESSKSHML QYKSIAQVNE TALKQMESAH ENFRLEAEKR 1001: QRSLEAELVS LRERVSELEN DCIQKSEQLA TAAAGKEDAL LSASAEIASL REENLVKKSQ IEAMNIQMST LKNDLETEHE KWRVAQRNYE RQVILLSETI 1101: QELTKTSQAL AALQEEASEL RKLADARGIE NSELNAKWSE EKLMLEQQKN LAEKKYHELN EQNKLLHSRL EAKHLNSAEK NSRSGTISSG STDSDHLEDS 1201: GLQRVVHYLR RTKEIAETEI SLMRQEKLRL QSQLESALKM AESARGSLTA ERASTRASLL TDDGIKSLQL QVSEMNLLRE SNMQLREENK HNFEKCQEMR 1301: EVAQKARMES ENFENLLKTK QTELDLCMKE MEKLRMETDL HKKRVDELRE TYRNIDIADY NRLKDEVRQL EEKLKAKDAH AEDCKKVLLE KQNKISLLEK 1401: ELTNCKKDLS EREKRLDDAQ QAQATMQSEF NKQKQELEKN KKIHYTLNMT KRKYEKEKDE LSKQNQSLAK QLEEAKEEAG KRTTTDAVVE QSVKEREEKE 1501: KRIQILDKYV HQLKDEVRKK TEDLKKKDEE LTKERSERKS VEKEVGDSLT KIKKEKTKVD EELAKLERYQ TALTHLSEEL EKLKHADGNL PEGTSAVQVL 1601: SGSILNDQAA AYVSAVEYFE RVARSIASNS QVSTKPTDMV TEPSSGIPAA EPSTMTRVPS STPLIKSPVA TTQQLPKVAS DNKEKRLISQ KPSTEFRRPS 1701: GRRIVRPQLV KPEESPKVDV DMPEAEGTGD EGKQPAAHEP ESQVTTSVRP VQTLVRKRQA DSLVSEPQQD SLTQGETSSE IAPPASKKAK GSESHPDTSE 1801: GENLAKEPAI DELMDATTTT DGDNEETEAE NAEEKTEEYV EAQQDNEADE PVEESPTETE TIPTEEESRD QTEEENQEPL TDMESDKEEG ELDLDTLEDL 1901: EEGTDVASMM RSPEKEEVQP ETLATPTQSP SRMETAMEEA ETTIETPVED DKTDEGGDAA EEAADIPNNA NDQQEAPETD IKPETSAATT SPVSTAPTTS 2001: STLASAITSS GAPETEDPKR APSPGGGSST IVTLADRAQM KRRERIANIV VSRAPNPATR GARGRTVNLR GGGRLLPRGG RAPRGGRGQS PSPP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)