AT1G75090.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.522 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNA glycosylase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2); Has 3694 Blast hits to 3694 proteins in 1578 species: Archae - 10; Bacteria - 3185; Metazoa - 5; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:28187647..28189612 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37349.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.94 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||
| Length | 329 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSIVSKLRSP VKPIDESRAI LCSTGNRFKV TKTEMTKKPQ LNPRVTKSPA TKKPDSNFSV STDDSSSSSS SSERSSVNTT NSGKVTTPSK RNGVEKLNNV 101: VASVAVVEDI SPKIPGPVKR CHWITPNSDP IYVLFHDEEW GVPVRDDKKL FELLVFSQAL AEFSWPSILR RRDDFRKLFE EFDPSAIAQF TEKRLMSLRV 201: NGCLILSEQK LRAIVENAKS VLKVKQEFGS FSNYCWRFVN HKPLRNGYRY GRQVPVKSPK AEYISKDMMQ RGFRCVGPTV MYSFLQASGI VNDHLTACFR 301: YQECNVETER ETKSHETETK LDLHSPLLV |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)