AT1G72650.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TRF-like 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana myb family transcription factor (At1g72650) | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:27350253..27353483 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70233.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||||||||||
| Length | 630 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ 101: TIGYLPAEGI PSRLSQIESS EAINSGLLHS DNVQPYTDQV KSRSEYNEEM LQKVEQEERL ENVHGSQMPS TPADANIQCS NENNFFEEDQ VHHEALLQDE 201: CKMNESDMME RCSNAVASPK ETALSAAAQK PDFSRVRGEI CLDNLPIKAL QETFRATFGR DTTVKDKTWL KRRIAMGLIN SCDVPTTNLR VKDNKLIGNQ 301: EKSNDVTNAI RKEMGDDVRA TKMKDAPSST DHVNGHSNGG NHYYASEDYS SEQRAAKRVR KPTRRYIEEL SETDDKQQND KSVIPSKDQR LSEKSEVRSI 401: SVSSGKRVTV TRMVSLAGSE IEVPYVSHVR RSRPRENIMA LLGCHSSYLE DKASAAESNL NLSPSQLSSE VVNRDSVEKS ASRPVQNEFA TSDENNVEHI 501: LSEVDQEMEP EHIDSSGNSS DENNIGVPIM QGGALRRKHH RAWTLSEIAK LVEGVSKYGA GKWSEIKKHL FSSHSYRTSV DLKDKWRNLL KTSFAQSPSN 601: SVGSLKKHGS MHIPTQILLR VRELAEKQSQ |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)