AT1G72320.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 23 | ||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||
| Computational Description (TAIR10) |
pumilio 23 (PUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27228984..27232514 | ||||||||
| Molecular Weight (calculated) | 82365.20 Da | ||||||||
| IEP (calculated) | 7.76 | ||||||||
| GRAVY (calculated) | -0.50 | ||||||||
| Length | 731 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGERGKSSNN HSERNKGMRR KDHKGNRGFD VDSSKKNQSG GAPNVKPASK KHSEFEHQNQ FVRKEIDPET SKYFSEIANL FDSNEVELEE RSVICGNALE 101: ETRGREYEIA TDYIISHVLQ TLLEGCELDQ LCSFIRNSAS VFPAIAMDRS GSHVAESALK SLATHLENPD AYSVIEEALH SICKVIVDNP LDMMCNCYGS 201: HVLRRLLCLC KGVSLDSPEL YGAKSSKALA KRLNLKMSQL DDNNLEIPHQ GFPGMLTYLL SGLLSCSRED MKYLQVDQYS SLVLQTALRL MLKQDEQLLE 301: IIPLILRCNS TNKKVEGFHI ETNVAKEILE SMKDNSFSHL VEVILEVAPE SLYNEMFNKV FKNSLFELSV DRCANFVIQA LISHARDQEQ MGIMWEELAP 401: RFKDLLEQGK SGVVASLIAV SQRLQSHENK CCEALVGAVC STNESRISIL PRLLFLDYYF GCRDKSTWEW APGAKMHVMG CLILQGIFKF SSDHIQPYIT 501: SLTSMKAEYI TETAKDSSGA RVIEAFLASD AATKQKRRLI IKLRGHFGEL SLHTSGSFTV EKCFDACNLT LREAIASELL DVKVDLSKTK QGPYLLRKLD 601: IDGYASRPDQ WKSRQEAKQS TYNEFCSAFG SNKSNFPKNT FVSDASEDAA QEIEVKNTRK EIDHHPTSGF KRHREKHAKD KDEPFAGEKR SKQKKNKTSE 701: ATDKPKLAGS KRPFLSGEMT GKNRHSNKMR I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)