AT1G65440.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.931 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : global transcription factor group B1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
global transcription factor group B1 (GTB1); FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: chromatin assembly or disassembly, transcription initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt6 (TAIR:AT1G63210.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24306988..24314302 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 166406.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1454 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKRIMSLRMT TESQFMEIQL SMMKTMMKKM MMTKMQCLDL ATKKKKKKKK KKRKKKDEGL DEDDYLLLQD NNVKFKKRQY KRLKKAQREQ GNGQGESSDD 0101: EFDSRGGTRR SAEDKIKDRL FDDVDVDDPP DDVGDEEDLV VEEDVVGSED EMADFIVDED DEHGPPKRGN SKKKKYRQGS DITAMRDANE IFGDVDELLT 0201: IRKKGLASNQ RMERRLEDEF EPTVLSEKYM TGNDDEIRQL DIPERMQISE ESTGSPPVDE ISIEEESNWI YAQLASQLRE SDGTFDGRGF SVNKDDIAKF 0301: LELHHVQKLE IPFIAMYRKE QCRSLLDTGD FDGANQGKKP ETKWHKVFWM IHDLDKKWLL LRKRKMALHG YYTKRYEEES RRVYDETRLN LNQYLFESVI 0401: KSLKVAETER EVDDVDSKFN LHFPPGEIGV DEGQYKRPKR KSQYSICSKA GLWEVANKFG YSAEQLGLAL SLEKLVDELE DAKETPEEMA KNFVCAMFEN 0501: SLAVLKGARH MAAVEISCEP SVKKYVRGIY MENAVVSTSP TADGNTVIDS FHQFSGIKWL REKPLSKFEG AQWLLIQKGE EEKLLQVTFK LPENYMNRLI 0601: SDCNEHYLSV GVSKYAQLWN EQRKLILEDA LHAFLLPSME KEARSLLTSR AKSRLLSEYG QALWNKVSAG PYQKKEMDIN LDEEAAPRVM ACCWGPGKPP 0701: NTFVMLDSSG EVLDVLYAGS LTSRSQNVND QQRKKSDQDR VLKFMMDHQP HVVALGAVNL SCTRLKDDIY EVIFQMVEEK PRDVGHGMDD LSIVYVDESL 0801: PRLYENSRIS GEQLPQQSGN VRRAVALGRY LQNPLAMVAT LCGPGREILS WKLHPLENFL QLDEKYGMVE QVMVDITNQV GIDINLAASH DWFFSPLQFI 0901: SGLGPRKAAS LQRSLVRAGS IFVRKDLIMH GLGKKVFVNA AGFLRIRRSG LAASSSQFID LLDDTRIHPE SYSLAQELAK DIYDEDVRGD SNDDEDAIEM 1001: AIEHVRDRPA SLRKVVLDEY LASKKRENKK ETYSNIIREL SCGFQDWRIP FKEPSPDEEF YMISGETEDT IAEGRIVQAS VRRLQNGRAI CVLDSGLTGM 1101: LMKEDFSDDG RDIVDLADQL KEGDILTCKI KSIQKQRYQV FLICKESEMR NNRHQHNQNV DAYYHEDRNS LQLVKEKARK EKELVRKHFK SRMIVHPRFQ 1201: NITADQATEY LSDKDFGESI VRPSSRGLNF LTLTLKIYDG VYAHKEIAEG GKENKDITSL QCIGKTLTIG EDTFEDLDEV MDRYVDPLVS HLKTMLNYRK 1301: FRKGTKSEVD DLLRIEKGEN PSRIVYCFGI SHEHPGTFIL SYIRSTNPHH EYIGLYPKGF KFRKRMFEDI DRLVAYFQRH IDDPLQESAP SIRSIAAKVP 1401: MRSPADHGSS GGSGWGSSQS EGGWKGNSDR SGSGRGGEYR NGGWGNSGGG RLGE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)