AT1G54920.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20470916..20474898 | ||||||||||||||||||||
| Molecular Weight (calculated) | 98185.50 Da | ||||||||||||||||||||
| IEP (calculated) | 4.23 | ||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||
| Length | 890 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGLDFFFSP SPIVDTSTGN NGGDDDWGDF VDSSDAFDSD RNGADSSHNR IESEKKSQAN WVTSRGPVPL SVFGEEEEDD TESSASVPSF GFSFDSFSSK 101: RNDSNGSVNR VVDSNTNHTV EISGLIPNLY RKNGHSDNNH GNSGGFNVDL SSSNRKIENS AVSLETNPLN LGTERSVKAS NVLNSSTIEV TLDPNYSDLG 201: FADKSDDDLD GWEFKTAESM FGTLGGSYKE EREKAVQNTA DVSSGVWSSP AINGTGPNFD TAKVDAVKLV AERENGDDDP WDNGGWEFKV AEAKEPKRDL 301: TNKESNGWGF GFGFEPVSKL ETTNSFQSSV EKETKKMENG SISFPSNGDV NSGGTSWAFK QPSLEIGNEK EEKEVQTGKP KGVLPLSFFE DEKSETSDTL 401: VHEDSFVLAS DFPVREKTKA PSPTVSISDL ISRLYSQVEE KNAVNILENS ATASNEVNGE DDSWEFQGPK MPITDSGIAE GADDFDSTWE FQGPSPALKM 501: SDVTEVVDEF DDDSWEFQGP TQPVKDSMSR IGDNGLWEYK HSSVENEVGN QSSVPNGFGE LHDKTVIRIE PNDYQDLFHK LKIELYHIAL YHLEKLKEAR 601: DKAADSDEVQ KCDSEIEDLQ NLLNNDVLIS GVNLESLQPG SSGMTELYKA LQEPKFRELD SEDLLTERLL SAEKDWKSTI ELLKHATLTL KIINLGSLEQ 701: QSKYASTWFE ISSTCAQELR HAASIWKQVI KNDVQEEILS KPQGKSYALS VGEIYRVVKI LRASTRLYKP WILLAPTSSN VLAVLDECLK LWLSSGLVEA 801: LLNSHDDSAD QLLESIKYIN EVDAFTLYTC ITSATSPTCY ISGLNTDIVP GIKTVEWNGE HYLLPLANIW ANLISRDPPN LPGHHFPIVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)