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AT1G54575.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AK221685EMBL:AY735542EMBL:AY773826EMBL:BT015058EMBL:BT015723EMBL:CP002684EnsemblPlants:AT1G54575
EnsemblPlants:AT1G54575.1entrez:2745830GeneID:2745830Gramene:AT1G54575.1HOGENOM:HOG000142241KEGG:ath:AT1G54575OMA:RAMWASP
Proteomes:UP000006548RefSeq:NP_974028.1TAIR:AT1G54575UniGene:At.23567UniProt:Q6DBG4
Coordinates (TAIR10) chr1:+:20387106..20387414
Molecular Weight (calculated) 11675.80 Da
IEP (calculated) 11.08
GRAVY (calculated) -1.29
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDHHLKADR VVARVEKSVN LVIGHRQTQR QAGSREYEGE SKQKYTTKKI PKWKHNDSER KIGQKQNNET PTMIVAGGWV RPNRAMWASP PNSSSSKPQK
101: NN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)