AT1G50200.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Alanyl-tRNA synthetase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Alanyl-tRNA synthetase (ALATS); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18591429..18598167 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106013.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 963 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPGSEPSETQ WPAKRVRDTY VDFFRGKGHK FWPSSPVVPH NDPTLLFANA GMNQYKPIFL GTADPNTELS KLSRACNTQK CIRAGGKHND LDDVGKDTYH 101: HTFFEMLGNW SFGDYFKKEA IEWAWELLTK VYGLPTDRIY ATYFGGDEKA GLQPDNEARD IWLKVLPSGR VLPFGCKDNF WEMGDTGPCG PCTEIHYDRI 201: GNRDAASLVN NDDPTCLEIW NLVFIQFNRE SDGSLKPLPA KHVDTGMGFE RLTSVLQNKM SNYDTDVFMP IFDDIQKATG ARPYSGKVGP EDVDRVDMAY 301: RVVADHIRTL SFAIADGSRP GNEGREYVLR RILRRAVRYG KEILKAEEGF FNGLVSSVIR VMGDVFTELK EHEKKITDII KEEEASFCKT LAKGIEKFRK 401: AGQAVQGNTL SGDDAFILWD TYGFPLDLTQ LMAEERGLLV DVDGFNKAME EARERSRSAQ NKQAGGAIVM DADATSTLHK AGVSATDDSF KYIWFQDHES 501: ELKAIYTGST FLESSAASDN VGLVLGSTSF YAEQGGQIFD TGLIEGSFGT FNVCNVQIFG GFVLHIGYLS KETGEVSVGD KVICKVDYER RKLIAPNHTC 601: THMLNYALKE VLGDHIDQKG SIVLPEKLRF DFSHGKPVDP EDLRRIESIV NKQIKDELDV FSKEAVLSEA KRIKGLRAVF GEVYPDPVRV VSIGRKVEDL 701: LADPENNEWS LLSSEFCGGT HITNTREAKA FALLSEEGIA KGIRRVTAVT TECAFDALNA ASLLEREVED ASRAEGSALE KKVSALKSRV DAAIIPAAKK 801: ADIRTKIASL QVISSFSLTN EVRKAQKKIA EQNLKKSVKL ATEAAESAAS DGKTFCIIQL DVGLDAAAVR EAVSKVMEKK GMSIMVFSTD ESTNKAVVCA 901: GVPEKSDQFK PLDVTEWLTT ALGPLKGRCG KGKGGLASGQ GTDASQVQAA LDMASSFASM KLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)