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AT1G20870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.934
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G54850.1); Has 109 Blast hits to 81 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHEReggNOG:ENOG410XQXIEMBL:AC007369EMBL:CP002684EnsemblPlants:AT1G20870EnsemblPlants:AT1G20870.1entrez:838680
GeneID:838680Genevisible:Q9SYQ0GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:1901537Gramene:AT1G20870.1
hmmpanther:PTHR34661hmmpanther:PTHR34661:SF1HOGENOM:HOG000153567KEGG:ath:AT1G20870OMA:AYFFQVAPaxDb:Q9SYQ0Pfam:Q9SYQ0
PhylomeDB:Q9SYQ0PIR:C86341PRIDE:Q9SYQ0PRO:PR:Q9SYQ0ProteinModelPortal:Q9SYQ0Proteomes:UP000006548RefSeq:NP_173511.1
TAIR:AT1G20870UniGene:At.51700UniProt:Q9SYQ0
Coordinates (TAIR10) chr1:-:7259287..7260775
Molecular Weight (calculated) 51935.30 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.62
Length 463 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLYSDGLSS DQYFLVNFIM SNYLGPDVYS DNPRCSSSQR LARGLPPYTL MHIGSSSLTV SQLQNLYYNV LRNAKSSLLL HPDMIYMYLK GYLPLEPSGK
101: FPQFTHFFPT NLHPQKRYSP SHEIVKGIVV IDDPAVGFIN KEELQRFRCL SRLDDLKIDR VTSLSPRVNL DESRETEQDC SRNGDATANG VVTNEDYNSS
201: GELQETCKRK EGEDAVASCV ISEPERLSGD IPESQGMKQD CSRNGESAFS GIVSDQDYYS FVKLPETCKR KNKEEEAVTG HAVSGTSKTP ERFRETYKRR
301: RFKNSSKKAT NKNGETLMER EKTDKPIPFS SEMKESDAEP SVVTTGTASK ETLGSSVGVV DIGVNKVAYF FQVALPGVRK DYGEFSCEIE SDGKVILEGS
401: TTRGEKNIKR HSRVFEMNIR KLCPPGPFKL CFNLPGPVDP RLFSPNFRSD GIFEGVIIRH KNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)