AT1G20450.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Dehydrin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 6841 Blast hits to 4185 proteins in 438 species: Archae - 12; Bacteria - 333; Metazoa - 1811; Fungi - 290; Plants - 1940; Viruses - 33; Other Eukaryotes - 2422 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:7088235..7089107 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29444.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.32 | ||||||||||||||||||||||||||||||||||||
| Length | 259 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK 101: LHRSNSSSSS VSKKGEDGEK KKKEKKKKIV EGDHVKTVEE ENQGVMDRIK EKFPLGEKPG GDDVPVVTTM PAPHSVEDHK PEEEEKKGFM DKIKEKLPGH 201: SKKPEDSQVV NTTPLVETAT PIADIPEEKK GFMDKIKEKL PGYHAKTTGE EEKKEKVSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)