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AT1G20300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 44443 Blast hits to 14229 proteins in 312 species: Archae - 5; Bacteria - 69; Metazoa - 601; Fungi - 771; Plants - 41531; Viruses - 0; Other Eukaryotes - 1466 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC026234EMBL:AF446865EMBL:AY052274EMBL:CP002684EnsemblPlants:AT1G20300
EnsemblPlants:AT1G20300.1entrez:838618Gene3D:1.25.40.10GeneID:838618Genevisible:Q9LN22GO:GO:0005739Gramene:AT1G20300.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF408HOGENOM:HOG000243285InParanoid:Q9LN22InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G20300
OMA:MIDSGCPPaxDb:Q9LN22Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9LN22Pfscan:PS51375
PhylomeDB:Q9LN22PIR:F86336PRIDE:Q9LN22PRO:PR:Q9LN22PROSITE:PS51375ProteinModelPortal:Q9LN22Proteomes:UP000006548
RefSeq:NP_564110.1SMR:Q9LN22STRING:3702.AT1G20300.1SUPFAM:SSF48452TAIR:AT1G20300TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.26508UniProt:Q9LN22
Coordinates (TAIR10) chr1:+:7029701..7031314
Molecular Weight (calculated) 61211.20 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.24
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLRSKLHL SRTLSFISPL LPKTFSTSAT SLLSDHENDE SAATITAAVS VPISPLLTPE DTQTVEKFHS IIKDHYRKNP TSPNDAILNP SLTLHALSLD
101: FSQIETSQVS PSVVRCVIEK CGSVRHGIPL HQSLAFFNWA TSRDDYDHKS PHPYNEMIDL SGKVRQFDLA WHLIDLMKSR NVEISIETFT ILIRRYVRAG
201: LASEAVHCFN RMEDYGCVPD KIAFSIVISN LSRKRRASEA QSFFDSLKDR FEPDVIVYTN LVRGWCRAGE ISEAEKVFKE MKLAGIEPNV YTYSIVIDAL
301: CRCGQISRAH DVFADMLDSG CAPNAITFNN LMRVHVKAGR TEKVLQVYNQ MKKLGCEPDT ITYNFLIEAH CRDENLENAV KVLNTMIKKK CEVNASTFNT
401: IFRYIEKKRD VNGAHRMYSK MMEAKCEPNT VTYNILMRMF VGSKSTDMVL KMKKEMDDKE VEPNVNTYRL LVTMFCGMGH WNNAYKLFKE MVEEKCLTPS
501: LSLYEMVLAQ LRRAGQLKKH EELVEKMIQK GLVARPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)