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AT1G16840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J29HeggNOG:ENOG410YXUSEMBL:AC051629EMBL:AY052282EMBL:CP002684EnsemblPlants:AT1G16840EnsemblPlants:AT1G16840.1
EnsemblPlants:AT1G16840.3EnsemblPlants:AT1G16840.4entrez:838255ExpressionAtlas:Q9FZ44GeneID:838255Gramene:AT1G16840.1Gramene:AT1G16840.3
Gramene:AT1G16840.4hmmpanther:PTHR33972hmmpanther:PTHR33972:SF2HOGENOM:HOG000241009KEGG:ath:AT1G16840OMA:METKTEAPhylomeDB:Q9FZ44
PIR:F86303Proteomes:UP000006548RefSeq:NP_564007.1RefSeq:NP_849677.1RefSeq:NP_973846.1TAIR:AT1G16840UniGene:At.16054
UniGene:At.49889UniProt:Q9FZ44
Coordinates (TAIR10) chr1:-:5763111..5763984
Molecular Weight (calculated) 17601.30 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.54
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MARSFSRSLS LSKGRFAAAS SSLLPSSHLV SFRSQSSDRR GDLYEIDTSA ASQSPSDPLI QKLEDAVHRI FVRRAQPDWL PFVPGASYWV PPPGSGSQSH
101: GIAQLVVKLA NPLTHEESLS TNSSHGWPSS DYFLKGVQPQ LMETKTETTS NSESHSEDEE V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)