AT1G14570.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UBX domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4983770..4987192 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49492.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.32 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGMLSSGDQ QRLVSSFLEI AVGQTAETAR QFLQATSWKL EEAIQLFYIG NEGGMLQSGT HTQPASNDDA AAQSWGAATG TGNEMILPND VDEVRAPLPV 101: VRETLYGESM YYGEEPKSPG IWEPDEGDSS ASASASASAS ESASAPRDSL ASLYRPPFHL MFQGSFEQAK TTSSSQDKWL LVNLQSTTEF SSHMLNRDTW 201: ANDAVSQTIK ANFIFWQVYD DTTEGRKVCT YYKLESIPVV LVIDPTTGQR MRMWTGMVDP ENLLEDLVPF MDGGPREHFA SLSKKRPRGS FSLTPHSKPK 301: EDVAKDEEEE ELQRALAASL EDNNMKESSD DQSTIIPEEV AVEAVTSAVL PTFPPLPEEP KGGDRSLQCR VGIRLPNGQR LQRNFLKTDT IQLLWSFCYS 401: QLEESERKKP LKLTQAIPGE SKTLEYESNL TLEQSGVANS MISATWE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)