AT1G11930.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type; CONTAINS InterPro DOMAIN/s: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (InterPro:IPR011078), Alanine racemase, N-terminal (InterPro:IPR001608); BEST Arabidopsis thaliana protein match is: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (TAIR:AT4G26860.1); Has 7155 Blast hits to 7155 proteins in 2359 species: Archae - 21; Bacteria - 4226; Metazoa - 130; Fungi - 135; Plants - 56; Viruses - 0; Other Eukaryotes - 2587 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:4028783..4030298 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27768.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||
| Length | 255 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNEEEPDKEH VADSTMSAAA IDGVAALRSV FQRVNQAAEK AGRGSDQIRV VAVSKTKPVS LIRQVYDAGQ RSFGENYVQE IIEKAPQLPE DIEWHFIGNL 101: QSNKVKPLLS GVPNLVTVES VDDEKIANML DRVVGNIGRK PLKVFVQVNT SGEDSKFGVE PSGCVGLAKH VKEACSNLEF SGLMTIGMAD YTSTPENFKL 201: LAKCRSEVCK ELGIPEEQCE LSMGMSGDFE LAIELGSTNV RIGSTIFGAR EYPKK |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)