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AT1G11700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF584
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF584; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT1G61930.1); Has 334 Blast hits to 333 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 328; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZSKeggNOG:ENOG410YUXPEMBL:AC007296EMBL:AF348581EMBL:AK227681EMBL:BT003115EMBL:CP002684
EnsemblPlants:AT1G11700EnsemblPlants:AT1G11700.1entrez:837714GeneID:837714GO:GO:0009507Gramene:AT1G11700.1hmmpanther:PTHR33083
hmmpanther:PTHR33083:SF11HOGENOM:HOG000238243InterPro:IPR007608KEGG:ath:AT1G11700OMA:DIWSHAVPfam:PF04520PhylomeDB:Q9SAA7
PIR:F86250Proteomes:UP000006548RefSeq:NP_172635.1TAIR:AT1G11700UniGene:At.24842UniProt:Q9SAA7
Coordinates (TAIR10) chr1:+:3945852..3946457
Molecular Weight (calculated) 21780.00 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.85
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGRKLTMS QSERYLGSSY SYGDSNGNSA TDESELTEED IWSHAVDHSP EMLESHGAWN TRDAVVRNGR VGGGLSLAFE DASSSPRIVH QIRGGGEGGG
101: GGGGGGRVER QLASSAPVNV PDWSKIYRVN SVESIHESDE EEEEDSGMMM PPHEYLAKSQ QRRSRKSGGG GSVFEGVGRT LKGRELRRVR DAIWSQTGFY
201: G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)