AT1G11480.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
eukaryotic translation initiation factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 398 Blast hits to 374 proteins in 109 species: Archae - 0; Bacteria - 21; Metazoa - 180; Fungi - 52; Plants - 82; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3864368..3866707 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 62920.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.34 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||
| Length | 565 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAQYHLISL SLPLLECKTP KVIPDRPVFD RAPWGNSIGR PDQRARPSSS HAIRNLDDKS LFLPHNVNIG RNFSEDERKP LDGHSAPRRV VSDDVFRFAN 101: NRLEMKADSV LAGRHSGWAA GPLTHSGTGN IENSVSGNHS NIWNGRKEVS VANNEPGQSP WTKQPAVSNL VHTSALDQVS SGGWQSKLLV PSQMGFDVVK 201: HSEIDTRVYK TNSPVISQGV EPHGTHVERA LIAEDGIQRG KKLSREYEKI PGPTYVDAKE AKIVANTNDK PHPKYSDVKP AGHLVQPTAP SEVVERPKLN 301: LLPRTKPLES VEKPVNDEKL ENSASVLIQR ENATQKSFNN SKSGLSTDEI PNQPAERPKL NLKPVAQLLE QPEVKTEKDR SAVFGGARPR ELVLKERGID 401: EPEHHKLDQP TDRMVLKPIE RVPEHASQRP VSSPRDMRTR KFDQKDGRNV SDIARSETQR RNWRENENKS ARQQQQTQEK TRHPSPETWR KPVPQKLDSP 501: NGTGIRHGKA ASALELAQAY SPFSDPKSGI GSSNSFNKSR NNQTQQQPFS RLVGSTTTGR QINGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)