suba logo
AT1G08930.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.542
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold.
Computational
Description (TAIR10)
EARLY RESPONSE TO DEHYDRATION 6 (ERD6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sugar transmembrane transporter activity; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, response to chitin, response to abscisic acid stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: ERD (early response to dehydration) six-like 1 (TAIR:AT1G08920.1); Has 27777 Blast hits to 27182 proteins in 2058 species: Archae - 500; Bacteria - 11725; Metazoa - 4936; Fungi - 6599; Plants - 2746; Viruses - 0; Other Eukaryotes - 1271 (source: NCBI BLink).
Protein Annotations
BioGrid:22655eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC000106EMBL:AJ249967EMBL:BT008661EMBL:CP002684
EMBL:D89051EnsemblPlants:AT1G08930EnsemblPlants:AT1G08930.1EnsemblPlants:AT1G08930.2entrez:837414GeneID:837414Genevisible:O04036
GO:GO:0005351GO:GO:0005355GO:GO:0005783GO:GO:0005887GO:GO:0009414GO:GO:0009651GO:GO:0009737
GO:GO:0010200GO:GO:0015992GO:GO:0035428GO:GO:0046323GO:GO:0051119GO:GO:1904659Gramene:AT1G08930.1
Gramene:AT1G08930.2hmmpanther:PTHR23500hmmpanther:PTHR23500:SF62HOGENOM:HOG000202868InParanoid:O04036InterPro:IPR003663InterPro:IPR005828
InterPro:IPR005829InterPro:IPR020846iPTMnet:O04036KEGG:ath:AT1G08930OMA:FGWIITYPaxDb:O04036Pfam:O04036
Pfam:PF00083Pfscan:PS50850PhylomeDB:O04036PIR:B86221PIR:T52132PRIDE:O04036PRINTS:PR00171
PRO:PR:O04036PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:O04036Proteomes:UP000006548Reactome:R-ATH-428790RefSeq:NP_001031006.1
RefSeq:NP_563830.1scanprosite:PS00217SMR:O04036STRING:3702.AT1G08930.1SUPFAM:SSF103473TAIR:AT1G08930tair10-symbols:ERD6
TCDB:2.A.1.1.97TIGRfam:TIGR00879TIGRFAMs:TIGR00879TMHMM:TMhelixUniGene:At.20925UniGene:At.71350UniProt:O04036
Coordinates (TAIR10) chr1:+:2873604..2876979
Molecular Weight (calculated) 54358.20 Da
IEP (calculated) 8.63
GRAVY (calculated) 0.48
Length 496 amino acids
Sequence (TAIR10)
(BLAST)
001: MERQKSMEKG LLRKSLSIRE RKFPNEDAFL ESGLSRKSPR EVKKPQNDDG ECRVTASVFL STFVAVSGSF CTGCGVGFSS GAQAGITKDL SLSVAEYSMF
101: GSILTLGGLI GAVFSGKVAD VLGRKRTMLF CEFFCITGWL CVALAQNAMW LDCGRLLLGI GVGIFSYVIP VYIAEIAPKH VRGSFVFANQ LMQNCGISLF
201: FIIGNFIPWR LLTVVGLVPC VFHVFCLFFI PESPRWLAKL GRDKECRSSL QRLRGSDVDI SREANTIRDT IDMTENGGET KMSELFQRRY AYPLIIGVGL
301: MFLQQLCGSS GVTYYASSLF NKGGFPSAIG TSVIATIMVP KAMLATVLVD KMGRRTLLMA SCSAMGLSAL LLSVSYGFQS FGILPELTPI FTCIGVLGHI
401: VSFAMGMGGL PWIIMAEIFP MNVKVSAGTL VTVTNWLFGW IITYTFNFML EWNASGMFLI FSMVSASSIV FIYFLVPETK GRSLEEIQAL LNNSVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)