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AT1G08060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25329561 (2015): nucleus nuclear matrix chromatin
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATP-dependent helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MORPHEUS MOLECULE (MOM); INVOLVED IN: chromatin silencing; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: chromatin remodeling 4 (TAIR:AT5G44800.1); Has 8505 Blast hits to 7857 proteins in 726 species: Archae - 6; Bacteria - 999; Metazoa - 3217; Fungi - 2019; Plants - 785; Viruses - 95; Other Eukaryotes - 1384 (source: NCBI BLink).
Protein Annotations
BioGrid:22563EC:3.6.4.-eggNOG:COG0553eggNOG:KOG0384EMBL:AC026875EMBL:AF213627EMBL:AF213628
EMBL:AK117959EMBL:BT006219EMBL:CP002684EnsemblPlants:AT1G08060EnsemblPlants:AT1G08060.1EnsemblPlants:AT1G08060.2entrez:837322
GeneID:837322Genevisible:Q9M658GO:GO:0004386GO:GO:0005524GO:GO:0005634GO:GO:0006342GO:GO:0006344
GO:GO:0006351GO:GO:0031047GO:GO:0042803GO:GO:0046872GO:GO:0051537Gramene:AT1G08060.1Gramene:AT1G08060.2
hmmpanther:PTHR10799hmmpanther:PTHR10799:SF620HOGENOM:HOG000153248InParanoid:Q9M658IntAct:Q9M658InterPro:IPR027417iPTMnet:Q9M658
KEGG:ath:AT1G08060ncoils:CoilOMA:ERTKIFRPaxDb:Q9M658PDB:3VEMPDBsum:3VEMPfam:Q9M658
PhylomeDB:Q9M658PIR:D86215PRIDE:Q9M658PRO:PR:Q9M658ProteinModelPortal:Q9M658Proteomes:UP000006548RefSeq:NP_563806.1
RefSeq:NP_849608.1SMR:Q9M658STRING:3702.AT1G08060.1SUPFAM:SSF52540TAIR:AT1G08060tair10-symbols:MOMtair10-symbols:MOM1
UniGene:At.20225UniProt:Q9M658
Coordinates (TAIR10) chr1:-:2501981..2510488
Molecular Weight (calculated) 218581.00 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.57
Length 2001 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKKDEKIGLT GRTIYTRSLA ASIPASVEQE TPGLRRSSRG TPSTKVITPA SATRKSERLA PSPASVSKKS GGIVKNSTPS SLRRSNRGKT EVSLQSSKGS
0101: DNSIRKGDTS PDIEQRKDSV EESTDKIKPI MSARSYRALF RGKLKESEAL VDASPNEEEL VVVGCSRRIP AGNDDVQGKT DCPPPADAGS KRLPVDETSL
0201: DKGTDFPLKS VTETEKIVLD ASPIVETGDD SVIGSPSENL ETQKLQDGKT DCSPPANAES KTLPVGETSL EKEYPQKFQD DNTDCLPPAN AESKRLPVGE
0301: TSLEKDTDFP LKSTTETGKM VLYASPIVET RDDSVICSPS TNLETQKLLV SKTGLETDIV LPLKRKRDTA EIELDACATV ANGDDHVMSS DGVIPSPSGC
0401: KNDNRPEMCN TCKKRQKVNG DCQNRSVCSC IVQPVEESDN VTQDMKETGP VTSREYEENG QIQHGKSSDP KFYSSVYPEY WVPVQLSDVQ LEQYCQTLFS
0501: KSLSLSSLSK IDLGALEETL NSVRKTCDHP YVMDASLKQL LTKNLELHEI LDVEIKASGK LHLLDKMLTH IKKNGLKAVV FYQATQTPEG LLLGNILEDF
0601: VGQRFGPKSY EHGIYSSKKN SAINNFNKES QCCVLLLETR ACSQTIKLLR ADAFILFGSS LNPSHDVKHV EKIKIESCSE RTKIFRLYSV CTVEEKALIL
0701: ARQNKRQNKA VENLNRSLTH ALLMWGASYL FDKLDHFHSS ETPDSGVSFE QSIMDGVIHE FSSILSSKGG EENEVKLCLL LEAKHAQGTY SSDSTLFGED
0801: HIKLSDEESP NIFWSKLLGG KNPMWKYPSD TPQRNRKRVQ YFEGSEASPK TGDGGNAKKR KKASDDVTDP RVTDPPVDDD ERKASGKDHM GALESPKVIT
0901: LQSSCKSSGT DGTLDGNDAF GLYSMGSHIS GIPEDMLASQ DWGKIPDESQ RRLHTVLKPK MAKLCQVLHL SDACTSMVGN FLEYVIENHR IYEEPATTFQ
1001: AFQIALSWIA ALLVKQILSH KESLVRANSE LAFKCSRVEV DYIYSILSCM KSLFLEHTQG LQFDCFGTNS KQSVVSTKLV NESLSGATVR DEKINTKSMR
1101: NSSEDEECMT EKRCSHYSTA TRDIEKTISG IKKKYKKQVQ KLVQEHEEKK MELLNMYADK KQKLETSKSV EAAVIRITCS RTSTQVGDLK LLDHNYERKF
1201: DEIKSEKNEC LKSLEQMHDV AKKKLAEDEA CWINRIKSWA AKLKVCVPIQ SGNNKHFSGS SNISQNAPDV QICNNANVEA TYADTNCMAS KVNQVPEAEN
1301: TLGTMSGGST QQVHEMVDVR NDETMDVSAL SREQLTKSQS NEHASITVPE ILIPADCQEE FAALNVHLSE DQNCDRITSA ASDEDVSSRV PEVSQSLENL
1401: SASPEFSLNR EEALVTTENR RTSHVGFDTD NILDQQNRED CSLDQEIPDE LAMPVQHLAS VVETRGAAES DQYGQDICPM PSSLAGKQPD PAANTESENL
1501: EEAIEPQSAG SETVETTDFA ASHQGDQVTC PLLSSPTGNQ PAPEANIEGQ NINTSAEPHV AGPDAVESGD YAVIDQETMG AQDACSLPSG SVGTQSDLGA
1601: NIEGQNVTTV AQLPTDGSDA VVTGGSPVSD QCAQDASPMP LSSPGNHPDT AVNIEGLDNT SVAEPHISGS DACEMEISEP GPQVERSTFA NLFHEGGVEH
1701: SAGVTALVPS LLNNGTEQIA VQPVPQIPFP VFNDPFLHEL EKLRRESENS KKTFEEKKSI LKAELERKMA EVQAEFRRKF HEVEAEHNTR TTKIEKDKNL
1801: VIMNKLLANA FLSKCTDKKV SPSGAPRGKI QQLAQRAAQV SALRNYIAPQ QLQASSFPAP ALVSAPLQLQ QSSFPAPGPA PLQPQASSFP SSVSRPSALL
1901: LNFAVCPMPQ PRQPLISNIA PTPSVTPATN PGLRSPAPHL NSYRPSSSTP VATATPTSSV PPQALTYSAV SIQQQQEQQP QQSLSSGLQS NNEVVCLSDD
2001: E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)