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AT1G07830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21841088 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein L29 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal protein L29 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, mitochondrial ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L47, mitochondrial (InterPro:IPR010729), Ribosomal protein L29 (InterPro:IPR001854); Has 365 Blast hits to 365 proteins in 201 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 146; Plants - 47; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121MXeggNOG:KOG3331EMBL:AF375438EMBL:AY081746EMBL:CP002684EnsemblPlants:AT1G07830EnsemblPlants:AT1G07830.1
entrez:837298Gene3D:1.10.287.310GeneID:837298GO:GO:0003735GO:GO:0005761GO:GO:0006412Gramene:AT1G07830.1
hmmpanther:PTHR21183hmmpanther:PTHR21183:SF18HOGENOM:HOG000005920InterPro:IPR001854InterPro:IPR010729KEGG:ath:AT1G07830KO:K17428
OMA:SEMKRMIPANTHER:PTHR21183Pfam:PF06984PhylomeDB:Q94JQ7Proteomes:UP000006548RefSeq:NP_172261.1SMR:Q94JQ7
STRING:3702.AT1G07830.1SUPFAM:SSF46561TAIR:AT1G07830TIGRfam:TIGR00012TIGRFAMs:TIGR00012UniGene:At.22253UniProt:Q94JQ7
Coordinates (TAIR10) chr1:+:2422549..2423392
Molecular Weight (calculated) 16887.50 Da
IEP (calculated) 10.73
GRAVY (calculated) -0.67
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ
101: FPNPERIPKV RRSMCRIKHV LTERAIEEPD SRRSAEMKRM VNGM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)