AT1G07390.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.593 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 15 (TAIR:AT1G74190.1); Has 131801 Blast hits to 32287 proteins in 1280 species: Archae - 68; Bacteria - 10618; Metazoa - 36270; Fungi - 1824; Plants - 73532; Viruses - 22; Other Eukaryotes - 9467 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2269893..2274654 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121886.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1083 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGLLQLKSYL KNLVDAEEEE EEGLSILKSW THHEGDCCRW ERVKCSDAIN GHVIGLSLDR LVPVAFESQT RSLNLSLLHS FPQLQSLNLS WNWFTNLSDH 0101: FLGFKSFGTL DKLTTLDFSH NMFDNSIVPF LNAATSIRSL HLESNYMEGV FPPQELSNMT NLRVLNLKDN SFSFLSSQGL TDFRDLEVLD LSFNGVNDSE 0201: ASHSLSTAKL KTLDLNFNPL SDFSQLKGLE SLQELQVLKL RGNKFNHTLS THVLKDLKML QELDLSDNGF TNLDHGRDVD ESRSEKRFDF REVVQKVETL 0301: WIGLRLSFQM SITHHKSVTV GGNGFLGLEI PTSLQVLDFK RNQLSLTHEG YLGICRLMKL RELDLSSNAL TSLPYCLGNL THLRTLDLSN NQLNGNLSSF 0401: VSGLPSVLEY LSLLDNNFDG SFLFNSLVNQ TRLTVFKLSS KVGVIQVQTE SSWAPLFQLK MLYLSNCSLG STMLGFLVHQ RDLCFVDLSH NKLTGTFPTW 0501: LVKNNTRLQT ILLSGNSLTK LQLPILVHGL QVLDISSNMI YDSIQEDIGM VFPNLRFMNF SSNHFQGTIP SSIGEMKSLQ VLDMSSNGLY GQLPIMFLSG 0601: CYSLRVLKLS NNQLQGKIFS KHANLTGLVG LFLDGNNFTG SLEEGLLKSK NLTLLDISDN RFSGMLPLWI GRISRLSYLY MSGNQLKGPF PFLRQSPWVE 0701: VMDISHNSFS GSIPRNVNFP SLRELRLQNN EFTGLVPGNL FKAAGLEVLD LRNNNFSGKI LNTIDQTSKL RILLLRNNSF QTYIPGKICQ LSEVGLLDLS 0801: HNQFRGPIPS CFSKMSFGAE QNDRTMSLVA DFDFSYITFL PHCQYGSHLN LDDGVRNGYQ PKPATVVDFL TKSRYEAYQG DILRYMHGLD LSSNELSGEI 0901: PIEIGDLQNI RSLNLSSNRL TGSIPDSISK LKGLESLDLS NNKLDGSIPP ALADLNSLGY LNISYNNLSG EIPFKGHLVT FDERSYIGNA HLCGLPTNKN 1001: CISQRVPEPP SVSTHAKEEE NEEEGNVIDM VWFYWTCAAV YISTSLALFA FLYIDSRWSR EWFYRVDLCV HHILQFKRSS VCN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)