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AT1G01060.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1
Computational
Description (TAIR10)
LATE ELONGATED HYPOCOTYL (LHY); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1); Has 2469 Blast hits to 2022 proteins in 280 species: Archae - 2; Bacteria - 257; Metazoa - 292; Fungi - 162; Plants - 1048; Viruses - 29; Other Eukaryotes - 679 (source: NCBI BLink).
Protein Annotations
BioGrid:24576eggNOG:ENOG410INV6eggNOG:ENOG4111HV1EMBL:AC007323EMBL:AJ006404EMBL:AK316728EMBL:AK316829
EMBL:AY519507EMBL:CP002684EnsemblPlants:AT1G01060EnsemblPlants:AT1G01060.1EnsemblPlants:AT1G01060.2EnsemblPlants:AT1G01060.3entrez:839341
ExpressionAtlas:Q6R0H1Gene3D:1.10.10.60GeneID:839341Genevisible:Q6R0H1GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0007623GO:GO:0009409GO:GO:0009651GO:GO:0009723GO:GO:0009733GO:GO:0009737
GO:GO:0009739GO:GO:0009751GO:GO:0009753GO:GO:0042752GO:GO:0042754GO:GO:0043433GO:GO:0044212
GO:GO:0046686GO:GO:0048574hmmpanther:PTHR12802hmmpanther:PTHR12802:SF43HOGENOM:HOG000084594InParanoid:Q6R0H1IntAct:Q6R0H1
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930iPTMnet:Q6R0H1KEGG:ath:AT1G01060KO:K12133
ncoils:CoilOMA:NQENPADPaxDb:Q6R0H1Pfam:PF00249Pfam:Q6R0H1Pfscan:PS51294PhylomeDB:Q6R0H1
PRIDE:Q6R0H1PRO:PR:Q6R0H1PROSITE:PS51294ProteinModelPortal:Q6R0H1Proteomes:UP000006548RefSeq:NP_001030924.1RefSeq:NP_171614.1
RefSeq:NP_849568.1SMART:SM00717SMR:Q6R0H1STRING:3702.AT1G01060.1SUPFAM:SSF46689TAIR:AT1G01060tair10-symbols:LHY
tair10-symbols:LHY1TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.25466UniProt:Q6R0H1
Coordinates (TAIR10) chr1:-:33992..37061
Molecular Weight (calculated) 70441.60 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.75
Length 645 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKQVSG DIETSKTSTV DNAVQDVPKK
201: NKDKDGNDGT TVHSMQNYPW HFHADIVNGN IAKCPQNHPS GMVSQDFMFH PMREETHGHA NLQATTASAT TTASHQAFPA CHSQDDYRSF LQISSTFSNL
301: IMSTLLQNPA AHAAATFAAS VWPYASVGNS GDSSTPMSSS PPSITAIAAA TVAAATAWWA SHGLLPVCAP APITCVPFST VAVPTPAMTE MDTVENTQPF
401: EKQNTALQDQ NLASKSPASS SDDSDETGVT KLNADSKTND DKIEEVVVTA AVHDSNTAQK KNLVDRSSCG SNTPSGSDAE TDALDKMEKD KEDVKETDEN
501: QPDVIELNNR KIKMRDNNSN NNATTDSWKE VSEEGRIAFQ ALFARERLPQ SFSPPQVAEN VNRKQSDTSM PLAPNFKSQD SCAADQEGVV MIGVGTCKSL
601: KTRQTGFKPY KRCSMEVKES QVGNINNQSD EKVCKRLRLE GEAST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)