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AT5G66060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G20270.1); Has 2544 Blast hits to 2536 proteins in 339 species: Archae - 0; Bacteria - 388; Metazoa - 1050; Fungi - 75; Plants - 443; Viruses - 21; Other Eukaryotes - 567 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G66060-MONOMERBioCyc:ARA:GQT-827-MONOMEREC:1.14.11.2eggNOG:ENOG410XS5J
eggNOG:KOG1591EMBL:AB011474EMBL:CP002688EnsemblPlants:AT5G66060
EnsemblPlants:AT5G66060.1entrez:836738ExpressionAtlas:F4JZ24GeneID:836738
Genevisible:F4JZ24GO:GO:0004656GO:GO:0005506GO:GO:0005789
GO:GO:0016021GO:GO:0031418hmmpanther:PTHR10869hmmpanther:PTHR10869:SF83
HOGENOM:HOG000096858InParanoid:F4JZ24InterPro:IPR005123InterPro:IPR006620
iPTMnet:F4JZ24OMA:DSKNERWPaxDb:F4JZ24Pfam:F4JZ24
Pfam:PF03171Pfam:PF13640Pfam:PF14227Pfscan:PS51471
PRIDE:F4JZ24PRO:PR:F4JZ24PROSITE:PS51471ProteinModelPortal:F4JZ24
Proteomes:UP000006548RefSeq:NP_201407.4SMART:SM00702SMR:F4JZ24
STRING:3702.AT5G66060.1TAIR:AT5G66060TMHMM:TMhelixUniGene:At.28883
UniProt:F4JZ24
Coordinates (TAIR10) chr5:+:26419481..26421118
Molecular Weight (calculated) 32599.80 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.44
Length 289 amino acids
Sequence (TAIR10)
(BLAST)
001: MMARPRNHRP SARKSSHSTL VFAVLIMSTF VILILLAFGI LSVPSNNAGS SKANDLTSIV RKTLQRSGED DSKNERWVEI ISWEPRASVY HNFLTKEECK
101: YLIELAKPHM EKSTVVDEKT GKSTDSRVRT SSGTFLARGR DKTIREIEKR ISDFTFIPVE HGEGLQVLHY EIGQKYEPHY DYFMDEYNTR NGGQRIATVL
201: MYLSDVEEGG ETVFPAAKGN YSAVPWWNEL SECGKGGLSV KPKMGDALLF WSMTPDATLD PSSLHGGCAV IKGNKWSSTK WLRVHEYKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)