AT5G65890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.986 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ACT domain repeat 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of ACT domain containing protein family. ACT domains are amino acid binding domains. Shows strongest expression in flowers and siliques. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ACT domain repeat 1 (ACR1); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 3 (TAIR:AT1G76990.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26355701..26357721 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52980.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMEIAYQPRI DSEIESLVER INPPRVCVDN DSDPECTLIK VDSANKYGIL LDMVQVLADL DLVISKCYIS SDGEWFMDVF HVTDQLGNKL TDRSLILYIQ 101: QAICSSRTGG ITKEMQSNLK REVQQRHVST EHTAFEITGI NRPGLLSEIS AVLSDIGCHV TAAVAWTHHE RAAMVIYLED GFNGGPIIDP IRKAQVKDHL 201: DTVMEAHHIV GDVSHVVVRV VEAKGVPVGW AHTERRLHEL MYGEGDYENC FDCDCFGDRC DALWRGRCER IHVTIEACNG YSMVNVKCRD RPKLLFDTVC 301: ALKELQFVVF HAVAGAKGST AEQEYFIRKK NGGTLETEGQ RERLRHCLVA AISRRASQGL KLEIRTENKM GLLSDVTRVV RENGLSITRA EMCTQGEIAV 401: GSFYVTDVNG GETGPSEVEA VVRELGGAVV SAVKGVGMMP RRIGSTSDSV EQDKAKSSIG RMFWSKLERL STSIRSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)