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AT5G57620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 36
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB36).
Computational
Description (TAIR10)
myb domain protein 36 (MYB36); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 68 (TAIR:AT5G65790.1); Has 9119 Blast hits to 8411 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 823; Fungi - 478; Plants - 5914; Viruses - 3; Other Eukaryotes - 1901 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB011482EMBL:AF062878
EMBL:AK228818EMBL:AY519640EMBL:BT030331EMBL:CP002688
EnsemblPlants:AT5G57620EnsemblPlants:AT5G57620.1entrez:835866Gene3D:1.10.10.60
GeneID:835866GO:GO:0000975GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0008285GO:GO:0030154GO:GO:0035987
GO:GO:0045597GO:GO:0045892GO:GO:0045893GO:GO:0048226
GO:GO:2000021GO:GO:2000067Gramene:AT5G57620.1hmmpanther:PTHR10641
hmmpanther:PTHR10641:SF544HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT5G57620KO:K09422OMA:TDSTENN
PaxDb:Q9FKL2Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9FKL2
PIR:T51650PROSITE:PS51294ProteinModelPortal:Q9FKL2Proteomes:UP000006548
RefSeq:NP_200570.1SMART:SM00717SMR:Q9FKL2STRING:3702.AT5G57620.1
SUPFAM:SSF46689TAIR:AT5G57620tair10-symbols:AtMYB36tair10-symbols:MYB36
UniGene:At.7489UniProt:Q9FKL2
Coordinates (TAIR10) chr5:+:23334904..23336388
Molecular Weight (calculated) 37982.50 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.83
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)