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AT5G44860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.724
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGNYeggNOG:ENOG410YF6PEMBL:AB010693EMBL:AC002342EMBL:AY087051EMBL:BT003852EMBL:BT005700
EMBL:CP002688EnsemblPlants:AT5G44860EnsemblPlants:AT5G44860.1entrez:834516GeneID:834516GO:GO:0016021Gramene:AT5G44860.1
hmmpanther:PTHR33133hmmpanther:PTHR33133:SF12HOGENOM:HOG000238363KEGG:ath:AT5G44860OMA:MLVYNSVPhylomeDB:O48574Proteomes:UP000006548
RefSeq:NP_199299.1TAIR:AT5G44860TMHMM:TMhelixUniGene:At.24720UniProt:O48574
Coordinates (TAIR10) chr5:-:18110688..18111653
Molecular Weight (calculated) 35630.60 Da
IEP (calculated) 6.79
GRAVY (calculated) 0.97
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLAAEELQF LNIQGILRES TTIPKFSPKT FYLITLTLIF PLSFAILAHS LFTQPILAQL DATPPSDQSK TNHEWTLLLI YQFIYVIFLF AFSLLSTAAV
101: VFTVASLYTG KPVSFSSTMS AIPLVLKRLF ITFLWVSLMM LVYNSVFLLF LVVLIVAIDL QSVILAVFSM VVIFVLFLGV HVYMTAWWHL ASVVSVLEPI
201: YGIAAMKKSY ELLNGRTNMA CSMVFMYLAL CGITAGVFGG VVVHGGDDFG LFTKIVVGGF LVGILVIVNL VGLLVQSVFY YVCKSFHHQP IDKSALHDHL
301: GGYLGDYVPL KSSIQMENFD I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)