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AT5G39600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX2MeggNOG:ENOG4112198EMBL:AY054662EMBL:AY072468EMBL:CP002688EnsemblPlants:AT5G39600EnsemblPlants:AT5G39600.1
entrez:833956Gene3D:3.40.30.10GeneID:833956Gramene:AT5G39600.1hmmpanther:PTHR33618hmmpanther:PTHR33618:SF1InterPro:IPR012336
InterPro:IPR019716KEGG:ath:AT5G39600KO:K17434OMA:RTDDHPPPfam:PF10780PhylomeDB:Q940G3Proteomes:UP000006548
RefSeq:NP_198776.1STRING:3702.AT5G39600.1SUPFAM:SSF52833TAIR:AT5G39600UniGene:At.21744UniGene:At.24451UniProt:Q940G3
Coordinates (TAIR10) chr5:-:15854188..15854771
Molecular Weight (calculated) 14438.30 Da
IEP (calculated) 5.33
GRAVY (calculated) -0.54
Length 127 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKFLSKVRI EFNTLDPRLA SCVEFLAQCN ARKAKESNPN CQVLVKRRTD EQPPQITVTF VNGVEEAFDA AATSAQSIRK MILDKGQYLE TEQMFREAGE
101: QWPVIIPDEE LLQEAPGVKP RKAEDKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)