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AT5G37510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24012629 (2013): nucleus
  • PMID:23761796 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:21296373 (2011): mitochondrion
  • PMID:20197505 (2010): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18189341 (2008): mitochondrion
  • PMID:17406791 (2007): mitochondrion
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12837548 (2003): mitochondrion
  • PMID:12492832 (2002): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADH-ubiquinone dehydrogenase, mitochondrial, putative
Curator
Summary (TAIR10)
Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
Computational
Description (TAIR10)
embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 12426 Blast hits to 11022 proteins in 2097 species: Archae - 340; Bacteria - 6853; Metazoa - 215; Fungi - 114; Plants - 76; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1034eggNOG:KOG2282EMBL:AK316868EMBL:CP002688EnsemblPlants:AT5G37510EnsemblPlants:AT5G37510.1entrez:833729
ExpressionAtlas:B9DFQ9Gene3D:3.10.20.30GeneID:833729GO:GO:0008137GO:GO:0009055GO:GO:0016020GO:GO:0042773
GO:GO:0051536Gramene:AT5G37510.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF115HOGENOM:HOG000031442InterPro:IPR000283InterPro:IPR001041
InterPro:IPR006656InterPro:IPR006963InterPro:IPR010228InterPro:IPR012675InterPro:IPR015405InterPro:IPR019574Pfam:PF00384
Pfam:PF09326Pfam:PF10588Pfam:PF13510Pfscan:PS51085Pfscan:PS51669PROSITE:PS00641PROSITE:PS00642
PROSITE:PS00643PROSITE:PS51085PROSITE:PS51669Proteomes:UP000006548RefSeq:NP_851103.1scanprosite:PS00641scanprosite:PS00642
scanprosite:PS00643SMART:SM00929SMR:B9DFQ9STRING:3702.AT5G37510.2SUPFAM:SSF53706SUPFAM:SSF54292SUPFAM:SSF54862
TAIR:AT5G37510tair10-symbols:CI76tair10-symbols:EMB1467TIGRfam:TIGR01973TIGRFAMs:TIGR01973UniGene:At.25266UniGene:At.67340
UniProt:B9DFQ9
Coordinates (TAIR10) chr5:+:14897490..14900352
Molecular Weight (calculated) 81186.60 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.15
Length 745 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLGILASRT IRPASRLLQS QTSNFFLRTI VSKPELQSPE SAAVSEPEPP TQILPPRNPV GGARVHFSNP EDAIEVFVDG YAVKVPKGFT VLQACEVAGV
101: DIPRFCYHSR LSIAGNCRMC LVEVEKSPKP VASCAMPALP GMKIKTDTPI AKKAREGVME FLLMNHPLDC PICDQGGECD LQDQSMAFGS DRGRFTEMKR
201: SVVDKNLGPL VKTVMTRCIQ CTRCVRFASE VAGVQDLGIL GRGSGEEIGT YVEKLMTSEL SGNVIDICPV GALTSKPFAF KARNWELKAT ETIDVSDAVG
301: SNIRVDSRGP EVMRIIPRLN EDINEEWISD KTRFCYDGLK RQRLSDPMIR DSDGRFKAVS WRDALAVVGD IIHQVKPDEI VGVAGQLSDA ESMMVLKDFV
401: NRMGSDNVWC EGTAAGVDAD LRYSYLMNTS ISGLENADLF LLIGTQPRVE AAMVNARICK TVRASNAKVG YVGPPAEFNY DCKHLGTGPD TLKEIAEGRH
501: PFCTALKNAK NPAIIVGAGL FNRTDKNAIL SSVESIAQAN NVVRPDWNGL NFLLQYAAQA AALDLGLIQQ SAKALESAKF VYLMGADDVN VDKIPKDAFV
601: VYQGHHGDKA VYRANVILPA SAFTEKEGTY ENTEGFTQQT VPAVPTVGDA RDDWKIVRAL SEVSGVKLPY NSIEGVRSRI KSVAPNLVHT DEREPAAFGP
701: SLKPECKEAM STTPFQTVVE NFYMTNSITR ASKIMAQCSA VLLKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)