suba logo
AT5G12220.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : las1-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
las1-like family protein; CONTAINS InterPro DOMAIN/s: Las1-like (InterPro:IPR007174); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411230QeggNOG:KOG2425EMBL:CP002688EnsemblPlants:AT5G12220EnsemblPlants:AT5G12220.1entrez:831096ExpressionAtlas:F4JZH9
GeneID:831096Gramene:AT5G12220.1hmmpanther:PTHR15002InParanoid:F4JZH9InterPro:IPR007174OMA:DWLKCIYPANTHER:PTHR15002
PaxDb:F4JZH9Pfam:PF04031PRIDE:F4JZH9ProteinModelPortal:F4JZH9Proteomes:UP000006548RefSeq:NP_196783.2STRING:3702.AT5G12220.1
TAIR:AT5G12220UniGene:At.66693UniProt:F4JZH9
Coordinates (TAIR10) chr5:+:3950218..3953014
Molecular Weight (calculated) 69295.20 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.44
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALAGIEAD IESYFGEQDQ QKSSPDGCKQ VPWLSWEEWD SVRESLFSSS PDRIASALER VATWRSRGSL PAPVDVTCSL IEIQLKDGFI PREKQSADAL
101: YSEHLLQMLY CMGILRLVNC VIEKTRRRED VSIADAARAI GIPRKLIDLR HEGSHRELPA LSVLRDAADE ALEWLKSYYW EQQKYQIPLK RDGTASIRRE
201: VKSKLRKLAF SLQLKRNPQF DSPLVKEKCS NKRIRKIVSS LVELYPSFSA EISSVLLEFL LKALDSSKST DLQNKAGQDF RVFLDEWKPV IMELSNREPE
301: LLLTLLKEVL DMIQNNERRR HETEKPVEEV SQVEQVPFLF AWLVSLLNGS KHFQRNSSLE VKPPSIFLME LIRRCLVLGA LGYELVLKSA FLLAEIVGGR
401: VLKEKLIKLP LMHKSSAIVP LKQSSTLVTA STTLLEQEKN LGNAGKRLEF VKLQLSKKKG IDTDKTGNRW RKAKTWSPCP IGMLPRIIGS SGRLPLLDNQ
501: NAKSISKQAQ GNNNAKRGAE CNRNQLEKSP CKRARKSAGD SESNDVTLES YEEEAEMEIE HAYEETETVA EENLMWNDEE ESRSCLMIDG EWKRVNDGEL
601: SGMASSVTIC V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)