AT5G12220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : las1-like family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
las1-like family protein; CONTAINS InterPro DOMAIN/s: Las1-like (InterPro:IPR007174); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3950218..3953014 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 69295.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||
| Length | 611 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEALAGIEAD IESYFGEQDQ QKSSPDGCKQ VPWLSWEEWD SVRESLFSSS PDRIASALER VATWRSRGSL PAPVDVTCSL IEIQLKDGFI PREKQSADAL 101: YSEHLLQMLY CMGILRLVNC VIEKTRRRED VSIADAARAI GIPRKLIDLR HEGSHRELPA LSVLRDAADE ALEWLKSYYW EQQKYQIPLK RDGTASIRRE 201: VKSKLRKLAF SLQLKRNPQF DSPLVKEKCS NKRIRKIVSS LVELYPSFSA EISSVLLEFL LKALDSSKST DLQNKAGQDF RVFLDEWKPV IMELSNREPE 301: LLLTLLKEVL DMIQNNERRR HETEKPVEEV SQVEQVPFLF AWLVSLLNGS KHFQRNSSLE VKPPSIFLME LIRRCLVLGA LGYELVLKSA FLLAEIVGGR 401: VLKEKLIKLP LMHKSSAIVP LKQSSTLVTA STTLLEQEKN LGNAGKRLEF VKLQLSKKKG IDTDKTGNRW RKAKTWSPCP IGMLPRIIGS SGRLPLLDNQ 501: NAKSISKQAQ GNNNAKRGAE CNRNQLEKSP CKRARKSAGD SESNDVTLES YEEEAEMEIE HAYEETETVA EENLMWNDEE ESRSCLMIDG EWKRVNDGEL 601: SGMASSVTIC V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)