AT5G08310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 73334 Blast hits to 15617 proteins in 287 species: Archae - 3; Bacteria - 36; Metazoa - 297; Fungi - 561; Plants - 70696; Viruses - 0; Other Eukaryotes - 1741 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2672756..2675254 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94076.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 832 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFSRIALLC QRFSRQQQQR QLLHRPLTTK LDNTRFLHPN QSKLAQNLIV IFTRQPFSPD DPELLILSPE LNTKVVETVL NGFKRWGLAY LFFNWASKQE 101: GYRNDMYAYN AMASILSRAR QNASLKALVV DVLNSRCFMS PGAFGFFIRC LGNAGLVDEA SSVFDRVREM GLCVPNAYTY NCLLEAISKS NSSSVELVEA 201: RLKEMRDCGF HFDKFTLTPV LQVYCNTGKS ERALSVFNEI LSRGWLDEHI STILVVSFCK WGQVDKAFEL IEMLEERDIR LNYKTYCVLI HGFVKESRID 301: KAFQLFEKMR RMGMNADIAL YDVLIGGLCK HKDLEMALSL YLEIKRSGIP PDRGILGKLL CSFSEESELS RITEVIIGDI DKKSVMLLYK SLFEGFIRND 401: LVHEAYSFIQ NLMGNYESDG VSEIVKLLKD HNKAILPDSD SLSIVINCLV KANKVDMAVT LLHDIVQNGL IPGPMMYNNI IEGMCKEGRS EESLKLLGEM 501: KDAGVEPSQF TLNCIYGCLA ERCDFVGALD LLKKMRFYGF EPWIKHTTFL VKKLCENGRA VDACKYLDDV AGEGFLGHMV ASTAAIDGLI KNEGVDRGLE 601: LFRDICANGH CPDVIAYHVL IKALCKACRT MEADILFNEM VSKGLKPTVA TYNSMIDGWC KEGEIDRGLS CIVRMYEDEK NPDVITYTSL IHGLCASGRP 701: SEAIFRWNEM KGKDCYPNRI TFMALIQGLC KCGWSGEALV YFREMEEKEM EPDSAVYLSL VSSFLSSENI NAGFGIFREM VHKGRFPVSV DRNYMLAVNV 801: TSKFVEDLRT SCYLTCLIKD GRIPILAVVS RI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)