suba logo
AT4G39080.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16461582 (2006): plant-type vacuole plant-type vacuole membrane
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20374526 (2010): plant-type vacuole
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar proton ATPase A3
Curator
Summary (TAIR10)
Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast.
Computational
Description (TAIR10)
vacuolar proton ATPase A3 (VHA-A3); FUNCTIONS IN: ATPase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: cellular response to nutrient levels, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: vacuolar proton ATPase A2 (TAIR:AT2G21410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15343eggNOG:COG1269eggNOG:KOG2189EMBL:AK221976EMBL:AK227321EMBL:AK230210EMBL:AL035679
EMBL:AL161594EMBL:AY060557EMBL:BT002615EMBL:CP002687EMBL:Z29167EnsemblPlants:AT4G39080EnsemblPlants:AT4G39080.1
entrez:830063GeneID:830063Genevisible:Q8W4S4GO:GO:0000220GO:GO:0000325GO:GO:0005773GO:GO:0005774
GO:GO:0005794GO:GO:0005886GO:GO:0007035GO:GO:0009507GO:GO:0009678GO:GO:0009705GO:GO:0009941
GO:GO:0015986GO:GO:0015991GO:GO:0016020GO:GO:0016021GO:GO:0016471GO:GO:0032119GO:GO:0043181
GO:GO:0045735GO:GO:0046961GO:GO:0051117GO:GO:0070072Gramene:AT4G39080.1hmmpanther:PTHR11629hmmpanther:PTHR11629:SF69
HOGENOM:HOG000037059InParanoid:Q8W4S4InterPro:IPR002490InterPro:IPR026028iPTMnet:Q8W4S4KEGG:ath:AT4G39080KO:K02154
ncoils:CoilOMA:CETYMFFPANTHER:PTHR11629PaxDb:Q8W4S4Pfam:PF01496Pfam:Q8W4S4PhylomeDB:Q8W4S4
PIR:T06068PIRSF:PIRSF001293PRIDE:Q8W4S4PRO:PR:Q8W4S4ProteinModelPortal:Q8W4S4Proteomes:UP000006548Reactome:R-ATH-77387
Reactome:R-ATH-917977RefSeq:NP_568051.1SMR:Q8W4S4STRING:3702.AT4G39080.1SwissPalm:Q8W4S4TAIR:AT4G39080tair10-symbols:VHA-A3
TMHMM:TMhelixUniGene:At.10101UniGene:At.70994UniProt:Q8W4S4
Coordinates (TAIR10) chr4:+:18209513..18214752
Molecular Weight (calculated) 92838.70 Da
IEP (calculated) 5.77
GRAVY (calculated) 0.03
Length 821 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND
101: IDLDDVEVKL GELEAELVEI NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE KSIDSTKQVK LGFLTGLVPR
201: EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG
301: QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLDVTKK CLVAEGWSPV FASREIQDAL QRAAVDSNSQ VGSIFQVLRT KESPPTYFRT NKFTSAIQEI
401: VDAYGVAKYQ EANPGVFTIV TFPFLFAVMF GDWGHGICIL LATMYLILKE KKLASQKLGD IMEMAFGGRY VILMMSLFSI YTGLIYNEFF SIPFPLFAPS
501: AYDCRDVSCS EATTIGLIKV RDTYPFGLDP VWHGSRSELP FLNSLKMKMS ILLGVSQMNL GIIMSYFNAR FFKSSVNIWF QFIPQMIFLN SLFGYLSVLI
601: IIKWCTGSQA DLYHVMIYMF LSPMDELGEN QLFPHQKTLQ LVLLFLALVS VPCMLLPKPF ILKKQHEARH QGQAYAPLDE TDESLHVETN GGGSHGHEEF
701: EFSEIFVHQL IHTIEFVLGA VSNTASYLRL WALSLAHSEL SSVFYEKVLL LAWGYNNPLI LIVGVLVFIF ATVGVLLVME TLSAFLHALR LHWVEFQNKF
801: YEGDGYKFAP FTFIFTANED E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)