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AT4G38890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.470
cytosol 0.398
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FMN-linked oxidoreductases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink).
Protein Annotations
EC:1.3.1.-eggNOG:COG0042eggNOG:KOG2333EMBL:AK118455EMBL:AL035656EMBL:AL161594EMBL:BT006228
EMBL:CP002687EnsemblPlants:AT4G38890EnsemblPlants:AT4G38890.1entrez:830044Gene3D:3.20.20.70GeneID:830044Genevisible:Q9T0J6
GO:GO:0017150GO:GO:0046872GO:GO:0050660Gramene:AT4G38890.1hmmpanther:PTHR11082hmmpanther:PTHR11082:SF8InParanoid:Q9T0J6
InterPro:IPR000571InterPro:IPR001269InterPro:IPR013785InterPro:IPR018517KEGG:ath:AT4G38890KO:K05544OMA:DISEYMA
PANTHER:PTHR11082PaxDb:Q9T0J6Pfam:PF01207Pfam:Q9T0J6Pfscan:PS50103PIR:T06088PRIDE:Q9T0J6
PRO:PR:Q9T0J6PROSITE:PS01136PROSITE:PS50103ProteinModelPortal:Q9T0J6Proteomes:UP000006548RefSeq:NP_195600.2scanprosite:PS01136
SMR:Q9T0J6STRING:3702.AT4G38890.1SUPFAM:SSF51395TAIR:AT4G38890UniGene:At.31136UniProt:Q9T0J6
Coordinates (TAIR10) chr4:-:18135909..18139100
Molecular Weight (calculated) 77578.00 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.54
Length 691 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDVIAEHAV DTSVEGDAKA ALPVQSTKQF SVYEATSEEL IERSMAPIKK EFLCPPPPSR SVKQNDAADV RAPQSGLVQE KKSKRQLKRE RREQSTINLC
101: PQVARTEDVD SCQYKDKCRF NHDIEAFKAQ KADDIEGQCP FVASGMKCAY GLSCRFLGSH RDITGNSDDK EKSEMNFFNK ETQRLLWKNK MTFTNADAKL
201: KSLGLLGHAK KSNAAEEITA EKTQNGMNGT QATEVAVDSA VSSEHTSEMI QDVDIPGPLE TEEVRPMKKA KSEDQKNSKT GDVGGVYDGV KLEEETKKNG
301: YPTSKANVED EDSIKIVETD SSLKLHPREK KKLIDFRDKL YLAPLTTVGN LPFRRLCKVL GADVTCGEMA MCTNLLQGQA SEWALLRRHS SEDLFGVQIC
401: GSYPDTVSRV VELIDRECTV DFIDINMGCP IDMVVNKSAG SALLNKPLRM KNIVEVSSSI VETPITIKVR TAFFEGKNRI DSLIADIGNW GATAVTIHGR
501: SRQQRYSKSA DWDYIYQCTK NATTNLQVIG NGDVYSYLDW NKHKSDCPEL SSCMIARGAL IKPWIFTEIK EQRHWDITSG ERLNIMKDFV RFGLQHWGSD
601: TKGVETTRHF LLEWLSYTFR YIPVGLLDVI PQQINWRPPS YFGRDDLETL MMSESAGDWV RISEMLLGKV PEGFTFAPKH KSNAYDRAEN G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)