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AT4G37090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2AIeggNOG:ENOG410YRE3EMBL:AK117452EMBL:AL161590
EMBL:BT006114EMBL:CP002687EMBL:Z99707EnsemblPlants:AT4G37090
EnsemblPlants:AT4G37090.1entrez:829863ExpressionAtlas:O23177GeneID:829863
Gramene:AT4G37090.1hmmpanther:PTHR36387hmmpanther:PTHR36387:SF1HOGENOM:HOG000238846
OMA:WAQRKTPPhylomeDB:O23177PIR:B85438Proteomes:UP000006548
RefSeq:NP_568016.1STRING:3702.AT4G37090.1TAIR:AT4G37090UniGene:At.31279
UniProt:O23177
Coordinates (TAIR10) chr4:+:17477338..17478559
Molecular Weight (calculated) 21508.50 Da
IEP (calculated) 5.66
GRAVY (calculated) -1.15
Length 186 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDNKDRDSD SDAPEELTQE QAKLEEEALW KIQRENKNRV SREKKERRKL MAEQVTLRKS RKIEIIEDVV EEEEPEENSE ALANKGFLSK DIIDFLAERE
101: KQKAESDSEE EEIIDELPRK KKQKSSGIET VIYKEIPPPE CLKTGLDFLK MRRAQVPRSS SVIKNSGQAL RLATGAALAK KQRQRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)